CX043664

Overview
NameCX043664
Unique NameCX043664
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:495..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043664 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = -3 
Query:  444 DNVGRSVFHPGSNLVTRGIGAEVFDKPTHPNFPTVYDWLYSGETRSKHH 590
            DNV RSVFHPGSNL ++ +G +VFD P  PN PTVYDW+YSGETRSKHH
Sbjct:   63 DNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CX043664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.175e-1473.47Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12F08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12F08-K16-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043664 ID=CX043664; Name=CX043664; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTGGACAAGCGTTAAACATTCAAAAAAACAACTTA
TTTATTAATAATAAAACATATATGCTCATCACGACCGTCCACGAAGGGAT
GATCTTGGCTCTTACAAAATGACAATCAAAAACATGTCCTAAACCCAAAA
ACCAACAACCTTTCATCTCCCCCCACAGCTTAACAATCCTCACATCACAT
ACAATTATTAAATTATATGATATAAAAACATCACAGTCTTTAATTTACTT
TTAGTCAGCAGCATTTTAAAACCAAACTTTAAATAGGAAGGACACGTAAT
ACAAATAGCATTAACAAAACGACAAGGACACGTTGCGAAATCCAAAACGA
AACGACACTATCTACAGACTACAGGCAACTCATCCGGTGAGTTGGTGACC
CATCACATTCATTTACATCCCTGTAGCGTATCATCCACTAATGATGATGC
TTGCTCCTAGTCTCCCCACTGTAAAGCCAGTCATAAACAGTGGGAAAGTT
AGGATGTGTGGGCTTGTCAAAAACCTCTGCACCGATACCCCTAGTAACAA
GGTTGCTACCGGGGTGAAACACGCTCCTCCCCACGTTGTCCT
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