CV884354

Overview
NameCV884354
Unique NameCV884354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884354 vs. ExPASy Swiss-Prot
Match: GLGB_MAIZE (1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic OS=Zea mays GN=SBE1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.700e-17
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = -1
Query:  408 DYRVGCLKPGKYKIALDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYA 593
            DYR+GC KPG YK+ LDSD  LFGG+ R+ H AE+F+++  +D+RP+SF VY PSRT VVYA
Sbjct:  735 DYRIGCRKPGVYKVVLDSDAGLFGGFSRIHHAAEHFTADCSHDNRPYSFSVYTPSRTCVVYA 796          
BLAST of CV884354 vs. ExPASy Swiss-Prot
Match: GLGB_MOUSE (1,4-alpha-glucan-branching enzyme OS=Mus musculus GN=Gbe1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = -1
Query:  399 DYRVGCLKPGKYKIALDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYALAD 593
            DYRVG   PGK+KI LDSD   +GG++RLDHN  YF+    ++ RP+S LVY PSR A++    D
Sbjct:  635 DYRVGTATPGKFKIVLDSDAAEYGGHQRLDHNTNYFAEAFEHNGRPYSLLVYIPSRVALILQNVD 699          
BLAST of CV884354 vs. ExPASy Swiss-Prot
Match: GLGB_HUMAN (1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.453e-12
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = -1
Query:  399 DYRVGCLKPGKYKIALDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYALAD 593
            DYRVG   PGK+KI LDSD   +GG++RLDH+ ++FS    ++ RP+S LVY PSR A++    D
Sbjct:  635 DYRVGTALPGKFKIVLDSDAAEYGGHQRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNVD 699          
BLAST of CV884354 vs. ExPASy Swiss-Prot
Match: GLGB_HORSE (1,4-alpha-glucan-branching enzyme OS=Equus caballus GN=GBE1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.453e-12
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = -1
Query:  399 DYRVGCLKPGKYKIALDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYALAD 593
            +YRVG   PGK+KI LDSD   +GG++RLDHN ++FS    +++RP S LVY PSR A++    D
Sbjct:  632 NYRVGTTLPGKFKIVLDSDAAEYGGHQRLDHNTDFFSEPYEHNERPSSLLVYIPSRVALILQNVD 696          
BLAST of CV884354 vs. ExPASy Swiss-Prot
Match: GLGB_ORYSJ (1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SBE1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.417e-12
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = -1
Query:  381 YRVGCLKPGKYKIALDSDYPLFGGYKRLDHNAEYFSS--------EGWYDDRPHSFLVYAPSRTAVVYALADEEEQPL 590
            Y+VGC  PGKY++ALDSD  +FGG+ R+ H+ ++F+S        E  +++RP+SF V +P RT V Y   DE+ + L
Sbjct:  688 YKVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSPPRTCVAYYRVDEDREEL 765          
BLAST of CV884354 vs. ExPASy Swiss-Prot
Match: GLGB_FELCA (1,4-alpha-glucan-branching enzyme OS=Felis catus GN=GBE1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = -1
Query:  399 DYRVGCLKPGKYKIALDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYALAD 593
            DYRVG   PGK++I LD+D   +GG++RLDH+ E+FS    +++RP S LVY P+R  ++    D
Sbjct:  632 DYRVGTTLPGKFRIVLDTDAAEYGGHQRLDHSTEFFSQPFKHNERPCSLLVYIPNRVGLILQNVD 696          
The following BLAST results are available for this feature:
BLAST of CV884354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GLGB_MAIZE5.700e-1761.291,4-alpha-glucan-branching enzyme 2, chloroplastic... [more]
GLGB_MOUSE3.823e-1352.311,4-alpha-glucan-branching enzyme OS=Mus musculus ... [more]
GLGB_HUMAN1.453e-1250.771,4-alpha-glucan-branching enzyme OS=Homo sapiens ... [more]
GLGB_HORSE1.453e-1250.771,4-alpha-glucan-branching enzyme OS=Equus caballu... [more]
GLGB_ORYSJ9.417e-1243.591,4-alpha-glucan-branching enzyme, chloroplastic/a... [more]
GLGB_FELCA3.578e-1146.151,4-alpha-glucan-branching enzyme OS=Felis catus G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002H05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884354 ID=CV884354; Name=CV884354; organism=Citrus sinensis; type=EST; length=593bp
CTCTGCGTTATTACTGAAGGTTCAGATACAATTTCACAGCACGTAGTCAG
TAGTCTGACAAAAATAGTAAAATATCTAGTTGATAAGCAGTAACCACAAC
TTTAGCCAATAAAGAAACAAGAAACATTTACACCATGGCACAGGAAACAT
TTTACACGGTATTGGTCTCCAATACTTCGCATGAAATTGCAACGTTGCAT
GCATGTTGTCCTCTCCTCGTGTTCATCCTGACTTCCCCAATTTATGTGAT
GCAAAAATTCAACGAGTCTCACTGTACTTTTATTCTCAAGATTGGTAAGT
GGAATGCTGATGCACAGCAAGGAGATCTCTCGAAACTCTCATATTAAATA
GAACCTGATGGTTATTTAATTTTATACATTAAGAGGTTGCTCTTCTTCAT
CTGCTAAAGCATAGACCACAGCCGTTCTGCTTGGCGCATATACCAAGAAG
GAATGAGGTCGGTCATCATACCACCCTTCCGAGCTGAAGTACTCGGCATT
GTGGTCGAGCCTTTTGTAGCCTCCAAACAGTGGATAATCTGAATCCAAGG
CAATCTTATACTTCCCTGGTTTCAAGCAACCCACACGATAGTC
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