CV884347

Overview
NameCV884347
Unique NameCV884347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9351 contig Csv1_Contig9351:73..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884347 vs. ExPASy Swiss-Prot
Match: P2C60_ARATH (Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 7.853e-82
Identity = 145/192 (75.52%), Postives = 170/192 (88.54%), Query Frame = -2
Query:  310 DFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAP-SAGGEGCDNMTMILVQFKNASNNGPSAAEQPP 882
            DF GP SGSTACVA++RDKQL VANAGDSRCV+SRK QA NLS+DHKPDLE EK+RILKAGGFI  GRVNGSLNL+RAIGD+EFK NK LP+EKQIVTA+PD++T+ELCDDD+FLV+ACDGIWDC++SQ+LVDF+ +QL +ETKLSV+CEKV DRCLAP ++GGEGCDNMTMILV+FKN +   PS  E  P
Sbjct:  153 DFAGPNSGSTACVAVVRDKQLFVANAGDSRCVISRKNQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLSRAIGDMEFKQNKFLPSEKQIVTASPDVNTVELCDDDDFLVLACDGIWDCMTSQQLVDFIHEQLNSETKLSVVCEKVLDRCLAPNTSGGEGCDNMTMILVRFKNPT---PSETELKP 341          
BLAST of CV884347 vs. ExPASy Swiss-Prot
Match: P2C21_ARATH (Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 4.309e-80
Identity = 145/194 (74.74%), Postives = 168/194 (86.60%), Query Frame = -2
Query:  310 DFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAP-SAGGEGCDNMTMILVQFK--NASNNGPSAAEQPP 882
            DF GPTSG TACVA+I+DK+L VANAGDSRCV+SRK QA NLSKDHKPDLEVEK+RILKAGGFI  GR+NGSLNL RAIGD+EFK NK LP+EKQ+VTA+PDI+TI+LCDDD+FLV+ACDGIWDC+SSQELVDF+ +QL +ETKLS +CEKV DRCLAP +A GEGCDNMT+ILVQFK  N S   P  ++  P
Sbjct:  153 DFTGPTSGCTACVALIKDKKLFVANAGDSRCVISRKSQAYNLSKDHKPDLEVEKERILKAGGFIHAGRINGSLNLTRAIGDMEFKQNKFLPSEKQMVTADPDINTIDLCDDDDFLVVACDGIWDCMSSQELVDFIHEQLKSETKLSTVCEKVVDRCLAPDTATGEGCDNMTIILVQFKKPNPSETEPEDSKPEP 346          
BLAST of CV884347 vs. ExPASy Swiss-Prot
Match: P2C58_ORYSJ (Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 3.414e-77
Identity = 136/192 (70.83%), Postives = 165/192 (85.94%), Query Frame = -2
Query:  316 DFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSA-GGEGCDNMTMILVQFKN--ASNNGPSAAEQ 882
            DF GPT GSTACVAI+R+ QLVVANAGDSRCV+SR GQA NLS+DHKP+LE E++RILKAGG+IQ+GRVNG++NL+RAIGD+EFK NK L  +KQ++TANPDI+T+ELCDDD+FLV+ACDGIWDC+SSQ+LVDF+ + +  E+ LS +CE+V DRCLAPS  GGEGCDNMTMILVQFK   + N   S AEQ
Sbjct:  153 DFAGPTCGSTACVAIVRNSQLVVANAGDSRCVISRNGQAYNLSRDHKPELEAERERILKAGGYIQMGRVNGTINLSRAIGDIEFKQNKFLSPDKQMLTANPDINTVELCDDDDFLVLACDGIWDCMSSQQLVDFIHEHINTESSLSAVCERVLDRCLAPSTLGGEGCDNMTMILVQFKKPISQNKNVSPAEQ 344          
BLAST of CV884347 vs. ExPASy Swiss-Prot
Match: P2C11_ORYSJ (Probable protein phosphatase 2C 11 OS=Oryza sativa subsp. japonica GN=Os02g0180000 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.695e-76
Identity = 133/178 (74.72%), Postives = 156/178 (87.64%), Query Frame = -2
Query:  352 DFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSA-GGEGCDNMTMILVQFK 882
            DF GPT G TACVA+IR+ QLVVANAGDSRCV+SR GQA NLS+DHKP+LE E+DRI+KAGGFI +GR+NGSLNL RAIGD+EFK NK LP EKQIVTANPDI+ +ELCDDD+FLV+ACDGIWDC+SSQ+LVDF+ + +  E+ LS +CE+V DRCLAPS  GGEGCDNMTM+LVQFK
Sbjct:  153 DFAGPTCGCTACVALIRNNQLVVANAGDSRCVISRAGQAYNLSRDHKPELEAERDRIVKAGGFIHMGRINGSLNLTRAIGDMEFKQNKFLPPEKQIVTANPDINVVELCDDDDFLVLACDGIWDCMSSQQLVDFIHEHIQKESSLSAVCERVLDRCLAPSTIGGEGCDNMTMVLVQFK 330          
BLAST of CV884347 vs. ExPASy Swiss-Prot
Match: P2C70_ORYSJ (Probable protein phosphatase 2C 70 OS=Oryza sativa subsp. japonica GN=Os09g0558000 PE=2 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 1.485e-72
Identity = 126/186 (67.74%), Postives = 159/186 (85.48%), Query Frame = -2
Query:  322 FHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKNASNNGPSAA 879
            F GPTSGSTACVAIIR+ +L+VANAGDSRCVLSRKG+A +LSKDHKPDL+ EK+RIL AGGFI  GRVNGSLNLARAIGD+E K N+ LPAE+QIVTA P+++T++L +DDEF+V+ACDGIWDC+SSQE+VDFV  ++  E  LS +CEK+ D CLAP +GG+GCDNMT+I+V+FK  S +  +++
Sbjct:  153 FPGPTSGSTACVAIIRNDELIVANAGDSRCVLSRKGRAYDLSKDHKPDLDAEKERILNAGGFIVAGRVNGSLNLARAIGDMELKQNEFLPAERQIVTAEPELNTVKLSEDDEFIVLACDGIWDCMSSQEVVDFVHKEMNTEDSLSAVCEKLLDHCLAPVSGGDGCDNMTVIIVKFKKPSKSAATSS 338          
BLAST of CV884347 vs. ExPASy Swiss-Prot
Match: Y0417_DROME (Probable protein phosphatase CG10417 OS=Drosophila melanogaster GN=CG10417 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.464e-51
Identity = 98/177 (55.37%), Postives = 136/177 (76.84%), Query Frame = -2
Query:  352 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQV-GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGE--GCDNMTMILVQFK 873
            G  SG TA V +++ + L VANAGDSRCV+SR GQA+ +S DHKP+ + E  RI+KAGG + + GRVNG LNL+RA+GD  +K N +LPAE+Q+++A PDI  + +  +DEF+V+ACDGIW+ +SS+E+V+FVR +L +  KLS ICE++FD CLAP+  G+  GCDNMT ++VQFK
Sbjct:  389 GKDSGCTAVVCLLQGRDLYVANAGDSRCVISRSGQAIEMSIDHKPEDDEEASRIIKAGGRVTLDGRVNGGLNLSRALGDHAYKTNVTLPAEEQMISALPDIKKLIITPEDEFMVLACDGIWNYMSSEEVVEFVRCRLKDNKKLSTICEELFDNCLAPNTMGDGTGCDNMTAVIVQFK 565          
BLAST of CV884347 vs. ExPASy Swiss-Prot
Match: PPM1G_BOVIN (Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 109/215 (50.70%), Postives = 146/215 (67.91%), Query Frame = -2
Query:  256 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQV-GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETK------LSVICEKVFDRCLAP--SAGGEGCDNMTMILVQFKNASNNGPSAAEQPPXXXXXXXXXXXSTGTESN 873
            G  SG+TA VA+IR KQL+VANAGDSRCV+S  G+AL++S DHKP+ EVE  RI  AGG + + GRVNG LNL+RAIGD  +K NK+LP E+Q+++A PDI  + L DD EF+VIACDGIW+ +SSQE++DF++ +++   +      LS I E++ D+CLAP  S  G GCDNMT I++ FK  +    +AA QP            + G E N
Sbjct:  322 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVIDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFKPRN----TAAPQPESGKRKLEEVLSTEGAEEN 532          
BLAST of CV884347 vs. ExPASy Swiss-Prot
Match: PPM1G_MACFA (Protein phosphatase 1G OS=Macaca fascicularis GN=PPM1G PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.927e-50
Identity = 103/183 (56.28%), Postives = 136/183 (74.32%), Query Frame = -2
Query:  352 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQV-GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETK------LSVICEKVFDRCLAP--SAGGEGCDNMTMILVQFK 873
            G  SG+TA VA+IR KQL+VANAGDSRCV+S  G+AL++S DHKP+ EVE  RI  AGG + + GRVNG LNL+RAIGD  +K NK+LP E+Q+++A PDI  + L DD EF+VIACDGIW+ +SSQE+VDF++ +++   +      LS I E++ D+CLAP  S  G GCDNMT I++ FK
Sbjct:  325 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 507          
BLAST of CV884347 vs. ExPASy Swiss-Prot
Match: PPM1G_HUMAN (Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.927e-50
Identity = 103/183 (56.28%), Postives = 136/183 (74.32%), Query Frame = -2
Query:  352 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQV-GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETK------LSVICEKVFDRCLAP--SAGGEGCDNMTMILVQFK 873
            G  SG+TA VA+IR KQL+VANAGDSRCV+S  G+AL++S DHKP+ EVE  RI  AGG + + GRVNG LNL+RAIGD  +K NK+LP E+Q+++A PDI  + L DD EF+VIACDGIW+ +SSQE+VDF++ +++   +      LS I E++ D+CLAP  S  G GCDNMT I++ FK
Sbjct:  324 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 506          
BLAST of CV884347 vs. ExPASy Swiss-Prot
Match: PPM1G_MOUSE (Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE=2 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 1.766e-49
Identity = 102/183 (55.74%), Postives = 136/183 (74.32%), Query Frame = -2
Query:  352 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQV-GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETK------LSVICEKVFDRCLAP--SAGGEGCDNMTMILVQFK 873
            G  SG+TA VA+IR KQL+VANAGDSRCV+S  G+AL++S DHKP+ EVE  RI  AGG + + GRVNG LNL+RAIGD  +K NK+LP ++Q+++A PDI  + L DD EF+VIACDGIW+ +SSQE+VDF++ +++   +      LS I E++ D+CLAP  S  G GCDNMT I++ FK
Sbjct:  321 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPQEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 503          
The following BLAST results are available for this feature:
BLAST of CV884347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
P2C60_ARATH7.853e-8275.52Probable protein phosphatase 2C 60 OS=Arabidopsis ... [more]
P2C21_ARATH4.309e-8074.74Probable protein phosphatase 2C 21 OS=Arabidopsis ... [more]
P2C58_ORYSJ3.414e-7770.83Probable protein phosphatase 2C 58 OS=Oryza sativa... [more]
P2C11_ORYSJ1.695e-7674.72Probable protein phosphatase 2C 11 OS=Oryza sativa... [more]
P2C70_ORYSJ1.485e-7267.74Probable protein phosphatase 2C 70 OS=Oryza sativa... [more]
Y0417_DROME2.464e-5155.37Probable protein phosphatase CG10417 OS=Drosophila... [more]
PPM1G_BOVIN2.086e-5050.70Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2... [more]
PPM1G_MACFA7.927e-5056.28Protein phosphatase 1G OS=Macaca fascicularis GN=P... [more]
PPM1G_HUMAN7.927e-5056.28Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE... [more]
PPM1G_MOUSE1.766e-4955.74Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884347 ID=CV884347; Name=CV884347; organism=Citrus sinensis; type=EST; length=883bp
CTCCATTTGGAATTGAAAGAACTATTCTCAGGAGTGATTCAATTTTGAAA
ACAAACCAGAGTAAAAGTACACACATGTACAGAGATCTTTAAGGATTATC
TATCCCATTAAAATGAAAAAGCTTAAATATTTACAACCAAATCATGAGAA
TCGTTTTCCAAATGTAAAATCAGGGACCATGGTTCTTGAGCTCAGCAGTG
TTTCAGACAGTAGAAAATGAGTACCATTTAGTCAGTGCAAAGAGTGCTAC
AGCTAATTCGATTCAGTCCCTGTGGAACTGCTGGCTAACTTGGATTGTTG
GTCAGATGATGGTGGCTGCTCAGCCGCAGAAGGACCATTATTAGAAGCAT
TTTTAAACTGAACCAAGATCATGGTCATGTTGTCACATCCTTCACCACCA
GCTGATGGAGCCAAGCACCGATCGAATACTTTCTCGCAAATGACTGATAG
TTTTGTTTCGTTGGTTAACTGATCCCTGACAAAATCGACAAGTTCTTGAC
TTGAAAGGCAATCCCAAATCCCATCACAAGCTATGACAAGAAACTCATCG
TCATCACAAAGTTCAATAGTACTTATATCAGGATTGGCAGTCACAATCTG
TTTTTCAGCAGGCAAACTTTTGTTTAGCTTGAACTCCACATCTCCAATAG
CTCTCGCCAAATTTAAACTTCCATTAACACGTCCAACTTGTATAAAACCA
CCAGCTTTGAGAATTCTATCTTTCTCAACCTCAAGATCAGGCTTATGGTC
TTTAGATAGATTAAGTGCCTGGCCCTTCCTCGATAACACACAACGAGAAT
CACCAGCATTTGCAACCACGAGTTGCTTGTCTCTAATGATTGCTACGCAA
GCTGTACTTCCAGAAGTTGGTCCATGAAAATCT
back to top