CV884345

Overview
NameCV884345
Unique NameCV884345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884345_ssr654 microsatellite CV884345_ssr654:654..671. BLAST: Citrus ESTs to Prunus persica proteins V1
CV884345_ssr232 microsatellite CV884345_ssr232:232..243. BLAST: Citrus ESTs to Prunus persica proteins V1
CV884345_ssr729 microsatellite CV884345_ssr729:729..749. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CV884345 vs. ExPASy Swiss-Prot
Match: OCS1_MAIZE (Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.572e-16
Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = -1 
Query:  270 RKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 509
            R+ KR +SNRESARRSR+RKQ+HLD+L+ +VA+L+ DN ++          Y  +E EN+VLRA+  EL  RL S+NE++
Sbjct:   26 RREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARARDIASQYTRVEQENTVLRARAAELGDRLRSVNEVL 105
The following BLAST results are available for this feature:
BLAST of CV884345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
OCS1_MAIZE7.572e-1650.00Ocs element-binding factor 1 OS=Zea mays GN=OBF1 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884345 ID=CV884345; Name=CV884345; organism=Citrus sinensis; type=EST; length=890bp
AGCCTAATTACACTGCAACAACAATAAAAACATAAAGACAAACAATTCTC
TCTCATGATTGATCTCTCAGAAAGAGGAGGTCAGCATCAGTACTGATGAA
ACATGTCTGCAGAAGCCATGATAGGCTGATTCAGATATGACAAATTCAGT
GGGTTCATGAAATTATCGAAAGCAGGCTCGTTGATCATGCTTGTGGCTTC
AAAGATAGCAGCGGCAGCACCGCCATTGTTTTCGTCGTCGTCGTTGTTGT
TGCTGGCATCCAAGAAGCTGATGATTTCATTGAGCGAGTGCAGCCTGTGA
GTGAGCTCACCAAGTTGGGCCCTCAACACTGAGTTCTCAGACTCAATGTT
CATGTAATGTTGCGTCGCGATGTTGATGCTGGTGATGATCTGGTGATTAT
CTTTCCTCAGCTGAGCAACCTGAGCCATCAGATCATCCAAATGCTTCTGC
TTCCTCATCCTCGATCTTCTAGCTGATTCTCTGTTCGATATCATCCTCTT
CCTCTTCCTTTGATCCATCAATGCTTGTAAACTCTCCTCAGACCCTGAGT
TTTGCAACATCAATGATGACGATCCTCCTGATGATGTCCCACTTGAAGAA
GCCATTTAAATTACTGCAATTCTTTTTTTTCCCTTTTCCAATAAGAGGAA
ACTGAGAGAGAGAGAGAGAGATTTTTGCAGGACCCAGATGAAATCAAAAC
CGAAAATTTTATTATGCAGATGATAATAATGATGATGATGATGATGATGA
TTACAGATTTATTGGCTAATTAACTATTAATAACTGAAAAATGAAGCTAA
AAATTAATCATGAAACATAATAGAGCCAGTAGAGGAAAACAACTGAGAAA
GATTGAACAAGCTGGGTCCTGCGCCTGAATGTGGAATATA
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