EY665257

Overview
NameEY665257
Unique NameEY665257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.500e-25
Identity = 65/108 (60.19%), Postives = 82/108 (75.93%), Query Frame = 2
Query:   35 GAG-IPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVLMIVALRQASYPSDQLGTLS 355
            G+G +P  D     P+ I AL++ L+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLL+MD TEVLHLLESPEALK K  EAM+VL  VA   A   ++QL +L+
Sbjct:  523 GSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLASLN 627          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.504e-17
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 2
Query:   74 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVL 298
            P+ I+ L++ LA ASP++   +LG+ LYPLVEQ E   AAKVTGMLL+MD  E+LHLLESPEALK K +EA++VL
Sbjct:  572 PLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVL 646          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.964e-17
Identity = 44/76 (57.89%), Postives = 61/76 (80.26%), Query Frame = 2
Query:   77 MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVLMI 304
            +PI+ L+++LA+ASP  +  +LGE LYPLVE+ E    AKVTGMLL+MD  E+LHL+ESPEALK+K +EA++VL +
Sbjct:  570 LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLRL 645          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.192e-14
Identity = 41/87 (47.13%), Postives = 62/87 (71.26%), Query Frame = 2
Query:   80 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVLMIVALRQASYPSDQ 340
            P+TA S  LA+A P++Q+ +LGE LYPL+ ++    A K+TGMLL++D++E+LH+LESPE+L +K  EA+ VL     ++ S  S Q
Sbjct:  541 PLTASS--LASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENSQKSAQ 625          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.528e-14
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 2
Query:   32 MGAGIPRRDASVGQPMPITALST----ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEV 295
            M  G   R  +VGQP P T +      AL+ A P+QQ+ +LGE+LYP ++  + + A K+TGMLL+MD+TE+L LLE  EAL+ K  EA+ V
Sbjct:  610 MRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSV 701          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.528e-14
Identity = 37/82 (45.12%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   80 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVLMIVALRQAS 325
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLL++D++E+LH+LESPE+L++K  EA+ VL     ++A+
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 623          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.528e-14
Identity = 37/82 (45.12%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   80 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVLMIVALRQAS 325
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLL++D++E+LH+LESPE+L++K  EA+ VL     ++A+
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 623          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 5.914e-14
Identity = 33/71 (46.48%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   92 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVLMI 304
            +++ LANA P++Q+ +LGE LYP++E +  + A K+TGMLL+++++E+LH++E  EALK K  EA+ VL +
Sbjct:  556 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQV 626          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.914e-14
Identity = 37/82 (45.12%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   80 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVLMIVALRQAS 325
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLL++D++E+LH+LESPE+L++K  EA+ VL     ++A+
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 623          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.914e-14
Identity = 37/82 (45.12%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   80 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVLMIVALRQAS 325
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLL++D++E+LH+LESPE+L++K  EA+ VL     ++A+
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 623          
The following BLAST results are available for this feature:
BLAST of EY665257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PABP2_ARATH1.500e-2560.19Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP5_ARATH1.504e-1761.33Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP3_ARATH1.964e-1757.89Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
EPAB_XENTR1.192e-1447.13Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP_EMENI4.528e-1446.74Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP1_RAT4.528e-1445.12Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE4.528e-1445.12Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP_DROME5.914e-1446.48Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP1_PONAB5.914e-1445.12Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP1_HUMAN5.914e-1445.12Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-H01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665257 ID=EY665257; Name=EY665257; organism=Citrus sinensis; type=EST; length=943bp
GCTGGCGGTATGCTCCCTGTTCCTCGTTGACATGGGCGCTGGCATACCTC
GGCGAGATGCATCTGTTGGACAACCTATGCCGATAACGGCTTTGTCTACT
GCTCTTGCAAATGCATCACCAGAACAGCAAAGGACGCTGCTGGGTGAAAG
TTTATATCCTCTAGTGGAGCAGCTGGAGCGAGATGCAGCGGCTAAAGTAA
CGGGAATGCTCTTGGATATGGACCACACAGAGGTTTTGCATCTTCTTGAG
TCACCAGAGGCTTTGAAGACTAAAAGTACTGAGGCAATGGAGGTTTTGAT
GATTGTTGCTCTTCGGCAAGCTAGTTATCCGTCTGATCAACTGGGTACAT
TGTCCCAGGATTGAAATCCTTGTATCCTGAACCCTTTGCTGACATTTGAA
CAAACTTAGAATATTTTGTGGATTTCAAAAAAATACAACATCAGATATAA
GAATAAATGAAGAAGTAGATGAAATCGGTTTCTCACAGATTCACTTAAGA
GAATCGTGAAAAACCTATATGAAATATTATAGTAATAAATAAAAGTTAAA
GACATGATGTAGTAGAAGAAATATGCAAGATAGAGAAATACGAAGGAAAT
CAACTACTGACACTTAGGACCATCTCACTACAAAGCGCACCGTGGGTTGG
ACGAAAAACCGACGCAGAATAAAAATGTAGTGATACGGTAGCAGTGTCTA
GTCCTGCGATACAAACAACACAACTAGTCGAATCCGATAACATATATTAC
TGGATAAGGATACTTCTTTACGTGACGTTAAAAATCAGACAAATCAAAGA
AAAATATGACAAGTGATATCAGGAGACAACAAAAATTATAAGGAACAGGA
TACAGATATAGTATAAGCAAATCGAAAAAAGATAAAATAACTTATCAGTA
CGTCAGACTGAGAGAGTCTATTACCATCTAAAACATTCTACAA
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