CV720154

Overview
NameCV720154
Unique NameCV720154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV720154_ssr13 microsatellite CV720154_ssr13:13..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV720154 vs. ExPASy Swiss-Prot
Match: AGO16_ORYSJ (Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2)

HSP 1 Score: 350.903 bits (899), Expect = 4.741e-96
Identity = 173/227 (76.21%), Postives = 199/227 (87.67%), Query Frame = -1
Query:  134 VEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIKFEDSSDTSITSAGSVP------VPELPRLHKNVESSMFFC 796
            VEMID+L+KP+ +G DDGIIRELLLDFY+TS+QRKPKQIIIFRDGVSESQF+QVLN+EL QIIKAYQ++ +  IPKFTVI+AQKNHHTKLFQ + P+NVPPGTVVD+ IVHPR YDFYM AHAG IGTSRP HYHVLLDEIGF PDD+Q L+ SLSYVYQRSTTAIS+VAPICYAHLAA+QMGQF+KFE+ ++TS + +G VP      VPELPRLH +V SSMFFC
Sbjct:  658 VEMIDSLFKPLDDGKDDGIIRELLLDFYKTSQQRKPKQIIIFRDGVSESQFSQVLNVELNQIIKAYQYMDQGPIPKFTVIIAQKNHHTKLFQENTPDNVPPGTVVDSGIVHPRQYDFYMYAHAGPIGTSRPTHYHVLLDEIGFLPDDVQKLVLSLSYVYQRSTTAISVVAPICYAHLAAAQMGQFMKFEEFAETS-SGSGGVPSSSGAVVPELPRLHADVCSSMFFC 883          
BLAST of CV720154 vs. ExPASy Swiss-Prot
Match: AGO4B_ORYSJ (Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 3.516e-91
Identity = 163/226 (72.12%), Postives = 188/226 (83.19%), Query Frame = -1
Query:  134 VEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIKFEDSSDTSI-----TSAGSVPVPELPRLHKNVESSMFFC 796
            +EM+ +L+KP     DDG+IRE L+DFY +S +RKP  +I+FRDGVSESQF QV+NIEL+QII+A + L E   PKFTVIVAQKNHHTK FQ+  P+NVPPGTVVD ++ HPRNYDFYMCAHAGMIGT+RP HYHVL DEIGFSPDDLQ L+HSLSYVYQRSTTAIS+VAPICYAHLAA+Q+G F+KFED SD S      TS GSVPVPELPRLH+ V SSMFFC
Sbjct:  687 LEMMSSLFKPRGT-EDDGLIRESLIDFYTSSGKRKPDHVIVFRDGVSESQFTQVINIELDQIIEACKFLDEKWSPKFTVIVAQKNHHTKFFQSGSPDNVPPGTVVDKQVCHPRNYDFYMCAHAGMIGTTRPTHYHVLHDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGTFLKFEDMSDASSSQGGHTSVGSVPVPELPRLHEKVRSSMFFC 911          
BLAST of CV720154 vs. ExPASy Swiss-Prot
Match: AGO4A_ORYSJ (Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 9.575e-89
Identity = 161/226 (71.24%), Postives = 183/226 (80.97%), Query Frame = -1
Query:  134 VEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIKFEDSSDTSI-----TSAGSVPVPELPRLHKNVESSMFFC 796
            +EMID L+KP     DDG+IRELL+DFY ++ +RKP Q+IIFRDGVSESQF QVLNIEL+QII+A + L E   PKFT+IVAQKNHHTK F      NVPPGTVVD  + HPRN DFYMCAHAGMIGT+RP HYH+L DEIGFS DDLQ L+HSLSYVYQRSTTAIS+VAPICYAHLAA+Q+ QFIKF++ S+TS      TSAGS PVPELPRLH  V SSMFFC
Sbjct:  679 LEMIDGLFKPQGAQEDDGLIRELLVDFYTSTGKRKPDQVIIFRDGVSESQFTQVLNIELDQIIEACKFLDENWSPKFTLIVAQKNHHTKFFVPGSQNNVPPGTVVDNAVCHPRNNDFYMCAHAGMIGTTRPTHYHILHDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVSQFIKFDEMSETSSSHGGHTSAGSAPVPELPRLHNKVRSSMFFC 904          
BLAST of CV720154 vs. ExPASy Swiss-Prot
Match: AGO15_ORYSJ (Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 3.094e-71
Identity = 144/231 (62.34%), Postives = 165/231 (71.43%), Query Frame = -1
Query:  134 VEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEAD-----IPKFTVIVAQKNHHTKLFQASGPE---NVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIKFEDSSDTSITSAGSV--PVPELPRLHKNVESSMFFC 796
            +EMID+L+K + N  D  IIRE L+DFY +S+  K        DGVSE QFNQVLNIEL QIIKA + L          PKFTVIVAQKNHHTK FQ        NVPPGTVVD  I HPRN DFYMCAHAGMIGT+RP HYHVL DE  F+PDDLQ L+H+LSYVYQRSTTAIS VAPICYAHLAA+Q+ QF++ +D++       G+   PVPELPRLH +V  SMFFC
Sbjct:  668 LEMIDSLFKLVGN-EDHVIIRESLMDFYNSSRGHK--------DGVSEGQFNQVLNIELAQIIKACEFLANEKNDSEWSPKFTVIVAQKNHHTKFFQTDRSNKVVNVPPGTVVDKGICHPRNCDFYMCAHAGMIGTTRPTHYHVLHDENNFTPDDLQELVHNLSYVYQRSTTAISGVAPICYAHLAAAQVSQFVRLDDAASEGSGDGGAPPRPVPELPRLHPDVRQSMFFC 889          
BLAST of CV720154 vs. ExPASy Swiss-Prot
Match: AGO12_ORYSJ (Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 3.329e-49
Identity = 108/233 (46.35%), Postives = 144/233 (61.80%), Query Frame = -1
Query:  134 EMIDALYK----PIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPE------NVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIKFEDS---SDTSITSAGSVPVPELPRLHKNVESSMFFC 793
            E+I  LY     P+      G+IRELL  FY+ + Q KP +II +RDG+SE QF+QVL  E++ I KA   L E  +P  T +V QK HHT+LF  +  +      N+ PGTVVDT I HP  +DFY+C+H+G+ GTSRP HYHVLLDE GF  D LQ L ++LSY Y R T A+SIV P  YAHL A +   +++ E S   S +S+T+        LP + +NV+  MF+C
Sbjct:  818 EIISNLYTEVKDPLKGIIRGGMIRELLRSFYQETGQ-KPSRIIFYRDGISEGQFSQVLLYEMDAIRKACASLQEGYLPPVTFVVVQKRHHTRLFPENRRDMMDRSGNILPGTVVDTMICHPSEFDFYLCSHSGIKGTSRPTHYHVLLDENGFKADTLQTLTYNLSYTYARCTRAVSIVPPAYYAHLGAFRARYYMEDEHSDQGSSSSVTTRTDRSTKPLPEIKENVKRFMFYC 1049          
BLAST of CV720154 vs. ExPASy Swiss-Prot
Match: PINH_ARATH (Protein PINHEAD OS=Arabidopsis thaliana GN=At5g43810 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.399e-47
Identity = 110/240 (45.83%), Postives = 144/240 (60.00%), Query Frame = -1
Query:  134 EMIDALYK----PIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPE--------NVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIKFEDSSD--------TSITSAGSVPVPELPRLHKNVESSMFFC 793
            E+I  LYK    P+      G+IR+LL+ F + + Q KP +II +RDGVSE QF QVL  EL+ I KA   L     P  T IV QK HHT+LF  +  +        N+ PGTVVDT+I HP  +DFY+C+HAG+ GTSRPAHYHVL DE  F+ D +Q+L ++L Y Y R T ++SIV P  YAHLAA +   +++ E   D        T  T+ G V V  LP L +NV+  MF+C
Sbjct:  750 ELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQ-KPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDKNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGSPGKKNTKTTTVGDVGVKPLPALKENVKRVMFYC 988          
BLAST of CV720154 vs. ExPASy Swiss-Prot
Match: AGO11_ORYSJ (Protein argonaute 11 OS=Oryza sativa subsp. japonica GN=AGO11 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.827e-47
Identity = 100/222 (45.05%), Postives = 136/222 (61.26%), Query Frame = -1
Query:  134 GIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLF--------QASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIK---FEDSSDTSITSAG-------SVPVPELPRLHKNVESSMFFC 745
            G+IREL+  F + +   KP +II +RDGVSE QF+QVL  E++ I KA   + E  +P  T +V QK HHT+LF        Q     N+ PGTVVDT+I HP  +DFY+C+H+G+ GTS P HY+VL DE  FS D LQ L + L Y Y R T ++SIV P+ YAHLAAS+   +++     D   +S ++AG        VPV  LP + +NV+  MF+C
Sbjct:  671 GMIRELIESFRKANGSYKPGRIIFYRDGVSEGQFSQVLLSEMDAIRKACASIEEGYLPPVTFVVVQKRHHTRLFPEDHHARDQMDRSRNILPGTVVDTKICHPSEFDFYLCSHSGIQGTSHPTHYYVLFDENNFSADALQTLTYHLCYTYARCTRSVSIVPPVYYAHLAASRARHYLEEGSLPDHGSSSASAAGGSRRNDRGVPVKPLPEIKENVKQFMFYC 892          
BLAST of CV720154 vs. ExPASy Swiss-Prot
Match: MEL1_ORYSJ (Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.546e-46
Identity = 102/227 (44.93%), Postives = 139/227 (61.23%), Query Frame = -1
Query:  134 IANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLF--------QASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIKFED--------SSDTSITSAGSVPVPELPRLHKNVESSMFFC 766
            + NG   G+IRELL+ F R    R+P++II +RDGVSE QF+ VL  E++ I KA   L E  +P  T +V QK HHT+LF              N+ PGTVVD +I HP  +DFY+C+HAG+ GTSRP HYHVL DE  F+ D LQ+L ++L Y Y R T A+S+V P  YAHLAA +   +++ E         SS  ++   G V V +LP++ +NV+  MF+C
Sbjct:  836 VVNG---GMIRELLIAF-RKKTGRRPERIIFYRDGVSEGQFSHVLLHEMDAIRKACASLEEGYLPPVTFVVVQKRHHTRLFPEVHGRRDMTDKSGNILPGTVVDRQICHPTEFDFYLCSHAGIQGTSRPTHYHVLYDENHFTADALQSLTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYYVEGESSDGGSTPGSSGQAVAREGPVEVRQLPKIKENVKDVMFYC 1058          
BLAST of CV720154 vs. ExPASy Swiss-Prot
Match: AGOL_ARATH (Argonaute-like protein At2g27880 OS=Arabidopsis thaliana GN=At2g27880 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.445e-46
Identity = 107/238 (44.96%), Postives = 144/238 (60.50%), Query Frame = -1
Query:  134 EMIDALYKPIANGN----DDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLF--------QASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIKFEDS------SDTSITSAGSVPVPELPRLHKNVESSMFFC 793
            E+I  LYK + +        G+IRE  + F R + Q  P++II +RDGVSE QF+QVL  E+  I KA   L E  +P+ T ++ QK HHT+LF              N+ PGTVVDT+I HP  +DFY+ +HAG+ GTSRPAHYHVLLDE GF+ D LQ L ++L Y Y R T ++SIV P  YAHLAA +   +++ E S      S +S T  G V + +LP +  NV+  MF+C
Sbjct:  762 EIIQDLYKLVQDPQRGLVHSGLIREHFIAFRRATGQI-PQRIIFYRDGVSEGQFSQVLLHEMTAIRKACNSLQENYVPRVTFVIVQKRHHTRLFPEQHGNRDMTDKSGNIQPGTVVDTKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTGVGQV-ISQLPAIKDNVKEVMFYC 997          
BLAST of CV720154 vs. ExPASy Swiss-Prot
Match: AGO1B_ORYSJ (Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 7.675e-46
Identity = 110/249 (44.18%), Postives = 146/249 (58.63%), Query Frame = -1
Query:  134 EMIDALYK----PIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPE--------NVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIKFEDSSDTSITS-----------------AGSVPVPELPRLHKNVESSMFFC 793
            E+I  L+K    P       G+I+ELL+ F R + Q KP++II +RDGVSE QF QVL  EL+ I KA   L     P  T +V QK HHT+LF  +  +        N+ PGTVVD++I HP  +DFY+C+HAG+ GTSRPAHYHVL DE  F+ D+LQ L ++L Y Y R T ++SIV P  YAHLAA +   +++ E S   S+ S                 AG+V V  LP L +NV+  MF+C
Sbjct:  871 ELIQDLFKVWQDPHRGTVTGGMIKELLISFKRATGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDQRTVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGAATSRGLPPGVRSARVAGNVAVRPLPALKENVKRVMFYC 1118          
The following BLAST results are available for this feature:
BLAST of CV720154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
AGO16_ORYSJ4.741e-9676.21Protein argonaute 16 OS=Oryza sativa subsp. japoni... [more]
AGO4B_ORYSJ3.516e-9172.12Protein argonaute 4B OS=Oryza sativa subsp. japoni... [more]
AGO4A_ORYSJ9.575e-8971.24Protein argonaute 4A OS=Oryza sativa subsp. japoni... [more]
AGO15_ORYSJ3.094e-7162.34Protein argonaute 15 OS=Oryza sativa subsp. japoni... [more]
AGO12_ORYSJ3.329e-4946.35Protein argonaute 12 OS=Oryza sativa subsp. japoni... [more]
PINH_ARATH1.399e-4745.83Protein PINHEAD OS=Arabidopsis thaliana GN=At5g438... [more]
AGO11_ORYSJ1.827e-4745.05Protein argonaute 11 OS=Oryza sativa subsp. japoni... [more]
MEL1_ORYSJ1.546e-4644.93Protein argonaute MEL1 OS=Oryza sativa subsp. japo... [more]
AGOL_ARATH3.445e-4644.96Argonaute-like protein At2g27880 OS=Arabidopsis th... [more]
AGO1B_ORYSJ7.675e-4644.18Protein argonaute 1B OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0012P18_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0012P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV720154 ID=CV720154; Name=CV720154; organism=Citrus sinensis; type=EST; length=796bp
CAACTATATATGTATATATATAACTAAAGGTTGCCACCTGCATATTTGAG
TTTTCCTAGCTGTTAACATATTCTAGGGCGATAGAAACTGAACAAAACTA
GCTGCATATTTACGAAAAGCAATCAGTATCTCAGCAGAAAAACATTGAAC
TTTCGACATTCTTATGAAGCCTAGGGAGCTCGGGAACAGGAACGCTCCCA
GCTGAGGTAATGCTGGTGTCAGATGAATCCTCAAACTTAATAAACTGCCC
CATTTGTGATGCAGCAAGGTGAGCGTAGCAAATTGGAGCAACAATAGAGA
TTGCAGTAGTACTTCTTTGATAGACATATGACAGAGAGTGGATAAGATTT
TGCAGGTCATCTGGAGAGAAACCAATCTCATCAAGCAAGACATGGTAGTG
AGCTGGTCTCGAAGTTCCGATCATCCCTGCATGGGCGCACATGTAGAAGT
CATAATTCCTTGGATGCACAATCCTTGTGTCCACAACTGTCCCAGGAGGA
ACATTTTCTGGACCACTGGCTTGGAATAGCTTGGTGTGGTGGTTCTTTTG
AGCCACTATAACAGTGAACTTGGGAATGTCAGCCTCGCCAAGATGCTGGT
AGGCCTTTATGATTTGTTCCAGCTCAATGTTCAAAACCTGATTAAATTGT
GATTCACTCACTCCATCCCTGAATATAATAATCTGTTTGGGTTTGCGTTG
CTTGCTTGTTCGGTAGAAGTCCAAGAGCAGCTCCCTGATGATACCATCAT
CATTCCCATTTGCTATAGGCTTGTACAAAGCATCTATCATCTCTAC
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