CV720153

Overview
NameCV720153
Unique NameCV720153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5545 contig Csv1_Contig5545:52..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV720153 vs. ExPASy Swiss-Prot
Match: AGO16_ORYSJ (Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2)

HSP 1 Score: 387.882 bits (995), Expect = 3.022e-107
Identity = 185/240 (77.08%), Postives = 215/240 (89.58%), Query Frame = 1
Query:   10 KINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHS 729
            K+NDQY TNVLLKIN+KLGG+NS L+LE   +IP++  TPT+ILGMDVSHGSPGR+D+PS+AAVVGS+ WPLISRYRA+VRTQS KVEMID+L+KP+ +G DDGIIRELLLDFY+TS+QRKPKQIIIFRDGVSESQF+QVLN+EL QIIKAYQ++ +  IPKFTVI+AQKNHHTKLFQ + P+NVPPGTVVD+ IVHPR YDFYM AHAG IGTSRP HYHVLLDEIGF PDD+Q L+ S
Sbjct:  572 KMNDQYYTNVLLKINAKLGGMNSKLSLEHRHMIPIVNQTPTLILGMDVSHGSPGRADVPSIAAVVGSRCWPLISRYRASVRTQSPKVEMIDSLFKPLDDGKDDGIIRELLLDFYKTSQQRKPKQIIIFRDGVSESQFSQVLNVELNQIIKAYQYMDQGPIPKFTVIIAQKNHHTKLFQENTPDNVPPGTVVDSGIVHPRQYDFYMYAHAGPIGTSRPTHYHVLLDEIGFLPDDVQKLVLS 811          
BLAST of CV720153 vs. ExPASy Swiss-Prot
Match: AGO4A_ORYSJ (Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.273e-97
Identity = 170/243 (69.96%), Postives = 202/243 (83.13%), Query Frame = 1
Query:    1 SPTKINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHS 729
            +PT++NDQY+TNVLLKIN+KLGG+NSLL +E S  IPL+   PT+ILGMDVSHGSPG+SDIPS+AAVV S+ WPL+S+YRA+VR+QS K+EMID L+KP     DDG+IRELL+DFY ++ +RKP Q+IIFRDGVSESQF QVLNIEL+QII+A + L E   PKFT+IVAQKNHHTK F      NVPPGTVVD  + HPRN DFYMCAHAGMIGT+RP HYH+L DEIGFS DDLQ L+HS
Sbjct:  590 APTRVNDQYITNVLLKINAKLGGLNSLLQIETSPSIPLVSKVPTIILGMDVSHGSPGQSDIPSIAAVVSSREWPLVSKYRASVRSQSPKLEMIDGLFKPQGAQEDDGLIRELLVDFYTSTGKRKPDQVIIFRDGVSESQFTQVLNIELDQIIEACKFLDENWSPKFTLIVAQKNHHTKFFVPGSQNNVPPGTVVDNAVCHPRNNDFYMCAHAGMIGTTRPTHYHILHDEIGFSADDLQELVHS 832          
BLAST of CV720153 vs. ExPASy Swiss-Prot
Match: AGO4B_ORYSJ (Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 1.662e-97
Identity = 170/243 (69.96%), Postives = 203/243 (83.54%), Query Frame = 1
Query:    1 SPTKINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHS 729
            +P ++NDQYL N+LLKIN+KLGGINSLL +E S  IPL+  TPT+ILGMDVSHG PG+SD PS+AAVV S+ WPLIS+YRA+V TQS K+EM+ +L+KP     DDG+IRE L+DFY +S +RKP  +I+FRDGVSESQF QV+NIEL+QII+A + L E   PKFTVIVAQKNHHTK FQ+  P+NVPPGTVVD ++ HPRNYDFYMCAHAGMIGT+RP HYHVL DEIGFSPDDLQ L+HS
Sbjct:  598 APQRVNDQYLLNLLLKINAKLGGINSLLQIEASPSIPLVSKTPTIILGMDVSHGQPGQSDRPSIAAVVSSRQWPLISKYRASVHTQSPKLEMMSSLFKPRGT-EDDGLIRESLIDFYTSSGKRKPDHVIVFRDGVSESQFTQVINIELDQIIEACKFLDEKWSPKFTVIVAQKNHHTKFFQSGSPDNVPPGTVVDKQVCHPRNYDFYMCAHAGMIGTTRPTHYHVLHDEIGFSPDDLQELVHS 839          
BLAST of CV720153 vs. ExPASy Swiss-Prot
Match: AGO15_ORYSJ (Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 1.906e-85
Identity = 165/251 (65.74%), Postives = 190/251 (75.70%), Query Frame = 1
Query:    1 SPTKINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEAD-----IPKFTVIVAQKNHHTKLFQASGPE---NVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHS 729
            +PTKINDQYLTNVLLKIN+KLGG+NSLL +E++  IPL+  TPT+ILGMDVSHGSPGR D+PSVAAVV S  WPLIS+Y+A+V TQS ++EMID+L+K + N  D  IIRE L+DFY +S+  K        DGVSE QFNQVLNIEL QIIKA + L          PKFTVIVAQKNHHTK FQ        NVPPGTVVD  I HPRN DFYMCAHAGMIGT+RP HYHVL DE  F+PDDLQ L+H+
Sbjct:  579 APTKINDQYLTNVLLKINAKLGGLNSLLQIERNQAIPLLSKTPTIILGMDVSHGSPGRDDVPSVAAVVSSLEWPLISKYKASVCTQSPRLEMIDSLFKLVGN-EDHVIIRESLMDFYNSSRGHK--------DGVSEGQFNQVLNIELAQIIKACEFLANEKNDSEWSPKFTVIVAQKNHHTKFFQTDRSNKVVNVPPGTVVDKGICHPRNCDFYMCAHAGMIGTTRPTHYHVLHDENNFTPDDLQELVHN 820          
BLAST of CV720153 vs. ExPASy Swiss-Prot
Match: AGO12_ORYSJ (Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.594e-58
Identity = 118/246 (47.97%), Postives = 158/246 (64.23%), Query Frame = 1
Query:   22 QYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALY----KPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPE------NVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHS 729
            QYL N+ LK+N K+GG N++L       IP++ D PT++ G DV+H SPG    PS+AAVV S  WP +++Y+  V TQS + E+I  LY     P+      G+IRELL  FY+ + Q KP +II +RDG+SE QF+QVL  E++ I KA   L E  +P  T +V QK HHT+LF  +  +      N+ PGTVVDT I HP  +DFY+C+H+G+ GTSRP HYHVLLDE GF  D LQ L ++
Sbjct:  735 QYLENLALKMNVKVGGRNTVLEDALHKKIPILTDRPTIVFGADVTHPSPGEDASPSIAAVVASMDWPEVTKYKCLVSTQSHREEIISNLYTEVKDPLKGIIRGGMIRELLRSFYQETGQ-KPSRIIFYRDGISEGQFSQVLLYEMDAIRKACASLQEGYLPPVTFVVVQKRHHTRLFPENRRDMMDRSGNILPGTVVDTMICHPSEFDFYLCSHSGIKGTSRPTHYHVLLDENGFKADTLQTLTYN 979          
BLAST of CV720153 vs. ExPASy Swiss-Prot
Match: AGO1C_ORYSJ (Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.682e-57
Identity = 123/252 (48.81%), Postives = 160/252 (63.49%), Query Frame = 1
Query:   10 KINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYK----PIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPE--------NVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHS 729
            K+N Q L N+ LKIN K+GG N++L    S  IPL+ D PT+I G DV+H  PG    PS+AAVV SQ WP +++Y   V  Q+ + E+I+ LYK    P       G+IRELL+ F R++ + KP++II +RDGVSE QF QVL  EL  I KA   L     PK T IV QK HHT+LF  +  +        N+ PGTVVD++I HP  +DFY+C+HAG+ GTSRPAHYHVL DE  F+ D LQ L ++
Sbjct:  676 KMNKQILANLALKINVKVGGRNTVLVDAVSRRIPLVTDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIEDLYKIWQDPQRGTVSGGMIRELLISFKRSTGE-KPQRIIFYRDGVSEGQFYQVLLYELNAIRKACASLETNYQPKVTFIVVQKRHHTRLFAHNHNDQNSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIKGTSRPAHYHVLWDENNFTADALQILTNN 926          
BLAST of CV720153 vs. ExPASy Swiss-Prot
Match: PINH_ARATH (Protein PINHEAD OS=Arabidopsis thaliana GN=At5g43810 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.196e-57
Identity = 122/252 (48.41%), Postives = 159/252 (63.10%), Query Frame = 1
Query:   10 KINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYK----PIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPE--------NVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHS 729
            KI+ QYL NV LKIN K+GG N++L    S  IPL+ D PT+I G DV+H   G    PS+AAVV SQ WP +++Y   V  Q+ + E+I  LYK    P+      G+IR+LL+ F + + Q KP +II +RDGVSE QF QVL  EL+ I KA   L     P  T IV QK HHT+LF  +  +        N+ PGTVVDT+I HP  +DFY+C+HAG+ GTSRPAHYHVL DE  F+ D +Q+L ++
Sbjct:  663 KISKQYLANVSLKINVKMGGRNTVLVDAISCRIPLVSDIPTIIFGADVTHPENGEESSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQ-KPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDKNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNN 913          
BLAST of CV720153 vs. ExPASy Swiss-Prot
Match: AGO1A_ORYSJ (Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.196e-57
Identity = 124/253 (49.01%), Postives = 162/253 (64.03%), Query Frame = 1
Query:   10 KINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYK----PIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADI-PKFTVIVAQKNHHTKLFQASGPE--------NVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHS 729
            K++ QYL NV LKIN K+GG N++L    +  IPL+ D PT+I G DV+H  PG    PS+AAVV SQ WP +++Y   V  Q+ + E+I  L+K    P       G+IRELL+ F R + Q KP++II +RDGVSE QF QVL  EL+ I KA   L EAD  P  T +V QK HHT+LF  +  +        N+ PGTVVD++I HP  +DFY+C+HAG+ GTSRPAHYHVL DE  F+ D LQ L ++
Sbjct:  747 KMSKQYLANVALKINVKVGGRNTVLVDALTRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKVWKDPQRGTVSGGMIRELLISFKRATGQ-KPQRIIFYRDGVSEGQFYQVLFYELDAIRKACASL-EADYQPPVTFVVVQKRHHTRLFANNHKDQRTVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNN 997          
BLAST of CV720153 vs. ExPASy Swiss-Prot
Match: AGOL_ARATH (Argonaute-like protein At2g27880 OS=Arabidopsis thaliana GN=At2g27880 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.868e-57
Identity = 121/252 (48.02%), Postives = 158/252 (62.70%), Query Frame = 1
Query:   10 KINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGN----DDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLF--------QASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHS 729
            K+N QY+ NV LKIN K GG N++L       IPLI D PT+I+G DV+H  PG    PS+AAVV S  WP I++YR  V  Q+ + E+I  LYK + +        G+IRE  + F R + Q  P++II +RDGVSE QF+QVL  E+  I KA   L E  +P+ T ++ QK HHT+LF              N+ PGTVVDT+I HP  +DFY+ +HAG+ GTSRPAHYHVLLDE GF+ D LQ L ++
Sbjct:  675 KLNKQYMENVALKINVKTGGRNTVLNDAIRRNIPLITDRPTIIMGADVTHPQPGEDSSPSIAAVVASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHSGLIREHFIAFRRATGQ-IPQRIIFYRDGVSEGQFSQVLLHEMTAIRKACNSLQENYVPRVTFVIVQKRHHTRLFPEQHGNRDMTDKSGNIQPGTVVDTKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFTADQLQMLTNN 925          
BLAST of CV720153 vs. ExPASy Swiss-Prot
Match: AGO1D_ORYSJ (Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.893e-57
Identity = 122/252 (48.41%), Postives = 160/252 (63.49%), Query Frame = 1
Query:   10 KINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYK----PIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPE--------NVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHS 729
            K+N Q L N+ LKIN K+GG N++L    S  IPL+ D PT+I G DV+H  PG    PS+AAVV SQ WP +++Y   V  QS + E+ID LY     P       G++RELL+ F R++ Q KP++II +RDGVSE QF QVL  EL+ I KA   L     P+ T IV QK HHT+LF  +  +        N+ PGTVVD++I HP  +DF++C+HAG+ GTSRPAHYHVL DE  F+ D LQ L ++
Sbjct:  707 KMNKQILANLALKINVKVGGRNTVLVDAVSRRIPLVTDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQSHRQELIDDLYNITHDPHRGPICGGMVRELLISFKRSTGQ-KPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEANYQPQVTFIVVQKRHHTRLFAHNHNDQNSVDRSGNILPGTVVDSKICHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNN 957          
The following BLAST results are available for this feature:
BLAST of CV720153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
AGO16_ORYSJ3.022e-10777.08Protein argonaute 16 OS=Oryza sativa subsp. japoni... [more]
AGO4A_ORYSJ1.273e-9769.96Protein argonaute 4A OS=Oryza sativa subsp. japoni... [more]
AGO4B_ORYSJ1.662e-9769.96Protein argonaute 4B OS=Oryza sativa subsp. japoni... [more]
AGO15_ORYSJ1.906e-8565.74Protein argonaute 15 OS=Oryza sativa subsp. japoni... [more]
AGO12_ORYSJ2.594e-5847.97Protein argonaute 12 OS=Oryza sativa subsp. japoni... [more]
AGO1C_ORYSJ1.682e-5748.81Protein argonaute 1C OS=Oryza sativa subsp. japoni... [more]
PINH_ARATH2.196e-5748.41Protein PINHEAD OS=Arabidopsis thaliana GN=At5g438... [more]
AGO1A_ORYSJ2.196e-5749.01Protein argonaute 1A OS=Oryza sativa subsp. japoni... [more]
AGOL_ARATH2.868e-5748.02Argonaute-like protein At2g27880 OS=Arabidopsis th... [more]
AGO1D_ORYSJ4.893e-5748.41Protein argonaute 1D OS=Oryza sativa subsp. japoni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0012P18_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0012P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV720153 ID=CV720153; Name=CV720153; organism=Citrus sinensis; type=EST; length=730bp
TCTCCTACTAAGATTAATGATCAGTATCTTACAAATGTATTACTTAAGAT
CAATTCTAAGCTTGGAGGAATAAATTCTTTATTGGCATTGGAGCAATCCT
CTCTCATCCCCCTGATAAAAGATACTCCTACAATGATTTTGGGTATGGAT
GTCTCTCATGGATCTCCTGGTCGATCAGATATTCCATCAGTTGCAGCAGT
TGTTGGCTCTCAATCTTGGCCTCTGATTTCAAGGTATAGGGCAGCTGTAA
GAACACAATCTTCGAAGGTAGAGATGATAGATGCTTTGTACAAGCCTATA
GCAAATGGGAATGATGATGGTATCATCAGGGAGCTGCTCTTGGACTTCTA
CCGAACAAGCAAGCAACGCAAACCCAAACAGATTATTATATTCAGGGATG
GAGTGAGTGAATCACAATTTAATCAGGTTTTGAACATTGAGCTGGAACAA
ATCATAAAGGCCTACCAGCATCTTGGCGAGGCTGACATTCCCAAGTTCAC
TGTTATAGTGGCTCAAAAGAACCACCACACCAAGCTATTCCAAGCCAGTG
GTCCAGAAAATGTTCCTCCTGGGACAGTTGTGGACACAAGGATTGTGCAT
CCAAGGAATTATGACTTCTACATGTGCGCCCATGCAGGGATGATCGGAAC
TTCGAGACCAGCTCACTACCATGTCTTGCTTGATGAGATTGGTTTCTCTC
CAGATGACCTGCAAAATCTTATCCACTCTC
back to top