CV720150

Overview
NameCV720150
Unique NameCV720150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV720150_ssr570 microsatellite CV720150_ssr570:570..581. BLAST: Citrus ESTs to Prunus persica proteins V1
CV720150_ssr146 microsatellite CV720150_ssr146:146..157. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV720150 vs. ExPASy Swiss-Prot
Match: USPAL_ARATH (Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.577e-15
Identity = 51/168 (30.36%), Postives = 84/168 (50.00%), Query Frame = -3 
Query:  236 GKKKMKVMVAIDESA---------ESVNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQQPFQRFV--LPALSTSSESVRKSQEENSAA---LLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 697
            G +  KVMVA++ S              A +W L+ +         +      + ++HVQ   +     + ++  S E  R  ++ N A    LL   +  C +  V  E+ +  GDPKD+ICQ  +++  D LVVGSRGLG+ ++ F+G+VS +C  HA CP++ +K
Sbjct:    2 GSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIV-------RSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIK 162
The following BLAST results are available for this feature:
BLAST of CV720150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
USPAL_ARATH8.577e-1530.36Universal stress protein A-like protein OS=Arabido... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0012P15_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0012P15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV720150 ID=CV720150; Name=CV720150; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTAAATAAAATGGTATCCAAAGTTTTTATAACTTG
AAAAGCATGAAAAGTTTCCATGTAACCATTCGAAATTACAGAAAATGACC
ATTCGAAATTACAGAAAATGAAACTTACACAGAGTTATATACTGCACAAA
CAAACAAAACCACATTCTTCAGATCGCAAACTTTCACTATGCCACAGTCC
TTGTAGTTCTGCTACTCATGCTGTTCCTTGGGTGGCTTTACAATAATGAT
CGGGCATACAGCATGATGCGCACAGTAATCACTTACACTCCCCAAGAATG
CCCTTTTAATCTTGCCGAGGCCGCGGCTTCCGACAACAAGGAGATCAATG
TGCATTTGCTCAGCAGACTGACAAATCATGTCCTTTGGATCCCCTTCAAG
AACCAGACTCTCTGCTTTCACCATCTTATCTTTACACATCTGCAATGCCC
GGGAAAGTAACGCCGCTGAATTTTCTTCTTGGGATTTCCTCACAGATTCT
GAACTGGTACTTAAGGCTGGCAAAACGAAGCGCTGAAATGGCTGCTGAAC
ATGAACGATTGTTAGGATACCGCCGCCGCCGCCAGCTTCCGGCGTAAAGC
CGACGATACCATAAAGATTGTCAAGAGCCCATTTGAGTGCATTGACACTC
TCTGCACTTTCATCAATAGCCACCATCACCTTCATCTTCTTCTTGCCGTC
GGTCATTTTTGTCTCCTCTTCTTCTTTTGATTGCAGCATTGCTGACCCTG
AACCACCTGGAACTG
back to top