CX043662

Overview
NameCX043662
Unique NameCX043662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043662_ssr522 microsatellite CX043662_ssr522:522..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig161 contig Csv1_Contig161:408..1163. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043662 vs. ExPASy Swiss-Prot
Match: ATPO_IPOBA (ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.681e-37
Identity = 80/137 (58.39%), Postives = 98/137 (71.53%), Query Frame = -2
Query:  345 KDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHF 755
            +D SVP +TRV AI EIC QAKF D T++FL++LAENGRL+++D I KRF ELTMAH+GEVK TVT+VI                 +           +DP+ILGGLVVEFGQKVFDMSI++RARQMERFLREP++F
Sbjct:  108 RDPSVPVDTRVNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVIPLPADEEKELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERFLREPLNF 244          
BLAST of CX043662 vs. ExPASy Swiss-Prot
Match: ATPO_ARATH (ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.396e-31
Identity = 71/140 (50.71%), Postives = 92/140 (65.71%), Query Frame = -2
Query:  336 KDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFGTL 755
            KD SVP  TR+ AI + C QAKF++ TK+FL +LAENG+L+NLD I K+F++LT AH+G+VKV VT+VI                 +           +DPSI GGL+VEF QKV DMSI++RA+QMER LREP+ F  L
Sbjct:   99 KDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERLLREPVDFNNL 238          
BLAST of CX043662 vs. ExPASy Swiss-Prot
Match: ATPO_PONAB (ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.393e-15
Identity = 44/129 (34.11%), Postives = 67/129 (51.94%), Query Frame = -2
Query:  357 VPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 743
            V    +VK++N+I  + +FS +T + + +LAENGRL N   +   F  +  AH+GEV  TVTS                   L            DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   83 VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLSRAMRE 211          
BLAST of CX043662 vs. ExPASy Swiss-Prot
Match: ATPO_HUMAN (ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.165e-14
Identity = 43/129 (33.33%), Postives = 66/129 (51.16%), Query Frame = -2
Query:  357 VPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 743
            V    +VK++N+I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVTS                   L            DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   83 VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMRE 211          
BLAST of CX043662 vs. ExPASy Swiss-Prot
Match: ATPO_RHIFE (ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum GN=ATP5O PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.700e-13
Identity = 39/124 (31.45%), Postives = 65/124 (52.42%), Query Frame = -2
Query:  357 RVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 728
            +VK++N++ T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  +VT+                   L            DPSI+GG+++  G+K  DMS K++ +++ R +RE
Sbjct:   88 KVKSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRGEVPCSVTTASPLDEATLSELKTVLQSFLSKNQILKLEVKTDPSIMGGMIIRIGEKYVDMSAKTKIQKLSRVMRE 211          
BLAST of CX043662 vs. ExPASy Swiss-Prot
Match: ATPO_MOUSE (ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.700e-13
Identity = 42/124 (33.87%), Postives = 64/124 (51.61%), Query Frame = -2
Query:  357 RVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 728
            +VK++N+I  + KFS +T + + +LAENGRL N   I   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS KS+ +++ + +RE
Sbjct:   88 KVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRE 211          
BLAST of CX043662 vs. ExPASy Swiss-Prot
Match: ATPO_RAT (ATP synthase subunit O, mitochondrial OS=Rattus norvegicus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 40/124 (32.26%), Postives = 64/124 (51.61%), Query Frame = -2
Query:  357 RVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 728
            +VK++ +I T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS KS+ +++ + +R+
Sbjct:   88 KVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRD 211          
BLAST of CX043662 vs. ExPASy Swiss-Prot
Match: ATPO_BOVIN (ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 40/129 (31.01%), Postives = 66/129 (51.16%), Query Frame = -2
Query:  357 VPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 743
            V    +VK+++++  + KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                   L           +DPSI+GG++V  G+K  DMS K++ +++ R +RE
Sbjct:   83 VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDEATLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211          
BLAST of CX043662 vs. ExPASy Swiss-Prot
Match: ATPO_CALMO (ATP synthase subunit O, mitochondrial OS=Callicebus moloch GN=ATP5O PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 39/131 (29.77%), Postives = 66/131 (50.38%), Query Frame = -2
Query:  351 VPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 743
            V    +VK++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GE+  TVT+                   L            DPSI+GG++V  G+K  DMS K++ +++ + +RE I
Sbjct:   83 VKHSVKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEIPCTVTTASPLEETTLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMREVI 213          
BLAST of CX043662 vs. ExPASy Swiss-Prot
Match: ATPO_CALJA (ATP synthase subunit O, mitochondrial OS=Callithrix jacchus GN=ATP5O PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 39/126 (30.95%), Postives = 65/126 (51.59%), Query Frame = -2
Query:  351 RVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 728
            +VK++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS K++ +++ + +RE I
Sbjct:   88 KVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTTASPLEEATLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMREVI 213          
The following BLAST results are available for this feature:
BLAST of CX043662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ATPO_IPOBA2.681e-3758.39ATP synthase subunit O, mitochondrial OS=Ipomoea b... [more]
ATPO_ARATH6.396e-3150.71ATP synthase subunit O, mitochondrial OS=Arabidops... [more]
ATPO_PONAB8.393e-1534.11ATP synthase subunit O, mitochondrial OS=Pongo abe... [more]
ATPO_HUMAN4.165e-1433.33ATP synthase subunit O, mitochondrial OS=Homo sapi... [more]
ATPO_RHIFE2.700e-1331.45ATP synthase subunit O, mitochondrial OS=Rhinoloph... [more]
ATPO_MOUSE2.700e-1333.87ATP synthase subunit O, mitochondrial OS=Mus muscu... [more]
ATPO_RAT4.605e-1332.26ATP synthase subunit O, mitochondrial OS=Rattus no... [more]
ATPO_BOVIN6.015e-1331.01ATP synthase subunit O, mitochondrial OS=Bos tauru... [more]
ATPO_CALMO1.750e-1229.77ATP synthase subunit O, mitochondrial OS=Callicebu... [more]
ATPO_CALJA1.750e-1230.95ATP synthase subunit O, mitochondrial OS=Callithri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12F07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12F07-K14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043662 ID=CX043662; Name=CX043662; organism=Citrus sinensis; type=EST; length=756bp
TTTTTTTTCATAAAAAGAGCTTTTGTCCTTGAGAACCGTATCATGTGCAG
GACCGAGTAATTATTTGAACAAACAAATTATACCCTTAAAAGATAATGGT
CCGAACCGAAACCCAAACAAAAAATGTTGATGTCCATCAAAACCATTTGC
CATGAAAGCAAAGTGATCAAGATGTGAATTTTATTTTGCCAATGATTCAA
TTCATTCAGAAATGGCGGAGCACAAGCAAACAGCATCAAACAAGAGCTTG
AATGGTTCTTTTACTTCTTGGAGCGTTCCAGTTGTTGCATAATCATCTTA
AAAATTTGCGCCCTGGGGCTGTGGCAGCCTTTTTAGAGGGTGCCAAAATG
AATGGGCTCACGTAGGAACCTCTCCATCTGCCGCGCCCTAGACTTAATGG
ACATGTCAAACACCTTTTGCCCAAACTCTACTACGAGCCCACCAAGAATG
CTAGGATCAACCTTCTGTTCAACCTTGACTTTCTTCCCTTGGCCAAGTGT
CTCTTGCAGTGTCTCTTTCAACTCTCTCTCTTCTTCTGGGGGAAGTGGAA
TAACGGATGTAACAGTAACTTTTACTTCGCCCTTGTGTGCCATGGTTAAC
TCCACAAACCTCTTAGCGATGGTGTCTAAGTTTCTAAGCCTCCCATTCTC
AGCCAAAACAACTAAGAAGTGCTTCGTAACATCTGAAAATTTAGCCTGAG
TACAGATTTCGTTAATGGCCTTAACTCTTGTCTCTGCAGGCACAGACAAG
TCCTTT
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