EY665227

Overview
NameEY665227
Unique NameEY665227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665227_ssr62 microsatellite EY665227_ssr62:62..77. BLAST: Citrus ESTs to Prunus persica proteins V1
EY665227_ssr86 microsatellite EY665227_ssr86:86..97. BLAST: Citrus ESTs to Prunus persica proteins V1
EY665227_ssr42 microsatellite EY665227_ssr42:42..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665227 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 9.752e-33
Identity = 82/172 (47.67%), Postives = 104/172 (60.47%), Query Frame = 1
Query:  160 MGQQSLIYSFVARGTVILSEYTEFTGNFTGITAQCLQKLPSSINKFTYNCDGLSFIYLVDDGFSYCVVAVESVGRQVPICLP*ACGKRILQKILVEEKVATSVC*GLDMELGPNMMNLCYIGSYHPKENQQAWLKRKLSVKSTRVNDGKIKKVLDVRKIRNFGGKKKKLYPK 675
            MGQQSLIYSFVARGTVIL+EYTEF GNFT + AQCLQKLPSS NKFTYNCDG +F YL D+GF+YCVV +ES GRQ+P+       K    K     K +T+    L+ E G  +       + HP+E        KLS    +V + K   + ++ K+ + G K + L  K
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERV-KEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEIS------KLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDK 165          
BLAST of EY665227 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.663e-32
Identity = 84/159 (52.83%), Postives = 104/159 (65.41%), Query Frame = 1
Query:  154 RKMGQQSLIYSFVARGTVILSEYTEFTGNFTGITAQCLQKLPSSINKFTYNCDGLSFIYLVDDGFSYCVVAVESVGRQVPICLP*ACGKRILQKILVEEKVATSVC*GLDMELGPNMMNLCYIGSYHPKE-NQQAWLKRKLS-VKSTRVNDGKIKKVLD 624
            R MGQQ+LIYSFVARGTVIL EYTEF GNFT + AQCLQKLPSS NKFTYNCDG +F YLV++GF+YCVVAVESVGRQ+P+       K    K     K  T+    L+ E G  +         HP E ++ A +K +++ VK   + +  I+KVLD
Sbjct:   64 RTMGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERV-KEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMEN--IEKVLD 219          
BLAST of EY665227 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.408e-31
Identity = 83/157 (52.87%), Postives = 102/157 (64.97%), Query Frame = 1
Query:  160 MGQQSLIYSFVARGTVILSEYTEFTGNFTGITAQCLQKLPSSINKFTYNCDGLSFIYLVDDGFSYCVVAVESVGRQVPICLP*ACGKRILQKILVEEKVATSVC*GLDMELGPNMMNLCYIGSYHPKE-NQQAWLKRKLS-VKSTRVNDGKIKKVLD 624
            M QQSLIYSFVARGTVIL E+T+F GNFT I AQCLQKLPSS NKFTYNCDG +F YLV+DGF+YCVVAV+S GRQ+P+       K    K     K AT+    L+ E G  +         HP E ++ A +K ++S VK   + +  I+KVLD
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERV-KEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMEN--IEKVLD 154          
BLAST of EY665227 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 4.097e-31
Identity = 82/157 (52.23%), Postives = 102/157 (64.97%), Query Frame = 1
Query:  160 MGQQSLIYSFVARGTVILSEYTEFTGNFTGITAQCLQKLPSSINKFTYNCDGLSFIYLVDDGFSYCVVAVESVGRQVPICLP*ACGKRILQKILVEEKVATSVC*GLDMELGPNMMNLCYIGSYHPKE-NQQAWLKRKLS-VKSTRVNDGKIKKVLD 624
            M QQSLIYSFVARGTVIL E+T+F GNFT I AQCLQKLPSS NKFTYNCDG +F YLV++GF+YCVVAV+S GRQ+P+       K    K     K AT+    L+ E G  +         HP E ++ A +K ++S VK   + +  I+KVLD
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERV-KEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMEN--IEKVLD 154          
BLAST of EY665227 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 7.232e-28
Identity = 85/191 (44.50%), Postives = 110/191 (57.59%), Query Frame = 1
Query:  160 MGQQSLIYSFVARGTVILSEYTEFTGNFTGITAQCLQKLPSSINKFTYNCDGLSFIYLVDDGFSYCVVAVESVGRQVPICLP*ACGKRILQKILVEEKVATSVC*GLDMELGPNMMNLCYIGSYHPKE-NQQAWLKRKLS-VKSTRVNDGKIKKVLDVRKIRNFGGKKKKLYPKERVSKRWKPIYEKKWLQ 726
            M QQSL YSF+ARGTVIL E+T+F GNFT + AQ L+ LPSS NKFTYNCDG +F  LV++GF+YCVVAV+S GR++P+       K    K    EK AT     L+ E G N+         HP E +  A  K ++S VKS  + +  I+KVL    I    G  +   P+    KR + +  KKW Q
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERV-KEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMEN--IEKVLARGVICEMLGSSES-QPQAFYIKRTQ-MKRKKWFQ 186          
BLAST of EY665227 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 6.123e-27
Identity = 75/158 (47.47%), Postives = 103/158 (65.19%), Query Frame = 1
Query:  160 MGQQSLIYSFVARGTVILSEYTEFTGNFTGITAQCLQKLPSSIN-KFTYNCDGLSFIYLVDDGFSYCVVAVESVGRQVPICLP*ACGKRILQKILVEEKVATSVC*GLDMELGPNMM-NLCYIGSYHPKENQQAWLKRKLS-VKSTRVNDGKIKKVLD 624
            MGQ+S IYSFVARGT+IL+EYTEFTGNF  I AQCLQKLPSS N KFTYNCD  +F +LV+DG++YCVVA +S+ +Q+ I       K   +K     K +T++   L+ E GP M  ++ YI  +  +  +   +K ++S VKS  + +  I K +D
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERV-KADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLEN--IDKAID 155          
BLAST of EY665227 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.408e-23
Identity = 78/213 (36.62%), Postives = 111/213 (52.11%), Query Frame = 1
Query:  160 MGQQSLIYSFVARGTVILSEYTEFTGNFTGITAQCLQKLPSSINKFTYNCDGLSFIYLVDDGFSYCVVAVESVGRQVPIC----LP*ACGKRILQKILVEEKVAT--------------SVC*GLDMELGPNMMNLCYIGSYHPKENQQAWLKRKLSVKSTRVND---GKIKKVLD-VRKIRNFGGKKKKL-YPKERVSKRWKPIYEKKWLQT 729
            M Q+ LIYSFVA+GTV+L+E+T ++GNF+ I  QCLQKLP++ +K+TY+CDG +F +LVD+GF + VVA ES GR VP      +     KR    I  +E+                 SV   LD E GP +         HP+E  +     KL  + T V       I+KVLD   KI     K + L +  +   ++ + +  K WLQ+
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKL---SKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQS 210          
The following BLAST results are available for this feature:
BLAST of EY665227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
VA726_ARATH9.752e-3347.67Putative vesicle-associated membrane protein 726 O... [more]
VA725_ARATH1.663e-3252.83Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA721_ARATH1.408e-3152.87Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA722_ARATH4.097e-3152.23Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA723_ARATH7.232e-2844.50Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA724_ARATH6.123e-2747.47Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA727_ARATH2.408e-2336.62Vesicle-associated membrane protein 727 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-E02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665227 ID=EY665227; Name=EY665227; organism=Citrus sinensis; type=EST; length=947bp
CCTGTTTCTCCATAATATCACTCAATTGATTCATTTTCAATAACAACAAC
AACAACCGTTTTCTCTCTCTCTCTCTCTTCGTTCTTCTCTCTCTCTCAGG
ATTAGGGTTTGTTCTTGTTGTTGTGGTCGTATTATTAGTAGTTGTTTTTT
ATCAGAAAAATGGGGCAGCAATCGTTGATCTACAGCTTCGTGGCTCGAGG
AACGGTGATACTATCTGAGTACACGGAGTTCACCGGAAACTTCACCGGCA
TAACTGCTCAGTGTCTCCAGAAACTTCCTTCTAGTATCAACAAGTTCACT
TACAATTGCGACGGCCTCTCTTTTATCTACCTCGTTGATGACGGCTTCTC
TTACTGTGTGGTTGCAGTTGAATCTGTTGGTCGACAGGTTCCAATTTGCC
TTCCTTGAGCGTGTGGAAAGAGGATTTTACAAAAAATATTGGTGGAGGAA
AAAGTGGCAACATCGGTCTGCTAAGGGTTGGACATGGAGTTGGGGCCCAA
TATGATGAACTTATGCTATATTGGATCGTATCATCCAAAGGAAAATCAGC
AAGCTTGGCTAAAGAGAAAGCTCAGTGTTAAAAGTACAAGGGTGAATGAT
GGAAAAATAAAAAAGGTCTTGGACGTGAGAAAAATAAGGAATTTCGGGGG
AAAAAAAAAAAAATTATATCCAAAGGAGAGAGTTTCAAAAAGATGGAAAC
CCATATATGAAAAAAAATGGTTACAAACATAAAATAACATGGATGGTGGG
GAAAAAAAATTGTGTTGGTCTCCACTAATATTTTCTTTAGGGAGAGTTAT
AATGTAGTAGAATCTCTAAAATAATATATTGTGGGAACATGGGCAGTTTT
CTTTTGTGATTATAGCAATGATTACTTTGCAACAAAAGAAGGAGAGTTGA
ATCGAATTATTGGAATTAATATAAGAATTATCTATAGGGAGGAAAAT
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