EY665226

Overview
NameEY665226
Unique NameEY665226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1008
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 7.152e-53
Identity = 107/155 (69.03%), Postives = 120/155 (77.42%), Query Frame = 2
Query:   80 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            F GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR   +       + G  + FSEGGLD LG     +   +SILA  A
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPS--LVHAQSILAIWA 164          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 9.341e-53
Identity = 107/155 (69.03%), Postives = 120/155 (77.42%), Query Frame = 2
Query:   80 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            F GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR   +       + G  + FSEGGLD LG     +   +SILA  A
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPS--LVHAQSILAIWA 163          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.081e-52
Identity = 106/155 (68.39%), Postives = 119/155 (76.77%), Query Frame = 2
Query:   80 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            F GKAV L+PS +E++  GR++MRKT +K+   SSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR   +       + G  + FSEGGLD LG     +   +SILA  A
Sbjct:   13 FAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPS--LVHAQSILAIWA 164          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.081e-52
Identity = 106/155 (68.39%), Postives = 120/155 (77.42%), Query Frame = 2
Query:   80 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            F GKAV L+PS +E++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR   +       + G  + FSEGGLD LG     +   +SILA  A
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPS--LVHAQSILAIWA 163          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.718e-52
Identity = 105/153 (68.63%), Postives = 117/153 (76.47%), Query Frame = 2
Query:   80 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            F G+AV L+PS  E++  GR+SMRKT +K V+S SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR   +       + G  + FSEGGLD LG     +   +SILA  A
Sbjct:   13 FAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPS--LVHAQSILAIWA 162          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 4.636e-52
Identity = 105/153 (68.63%), Postives = 116/153 (75.82%), Query Frame = 2
Query:   80 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            F G+AV L+PS +E+S  GRI+MRK  +KS  S SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR   +       + G  + FSEGGLD LG     +   +SILA  A
Sbjct:   13 FAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPS--LVHAQSILAIWA 162          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 6.055e-52
Identity = 105/155 (67.74%), Postives = 120/155 (77.42%), Query Frame = 2
Query:   80 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            F GKAV L+PS +E++  G+++MRKT SK+  VSS SPWYGP+RVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR   +       +GG  + FS+GGLD LG     +   +SILA  A
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGS-QIFSQGGLDYLGNPS--LVHAQSILAIWA 164          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 7.908e-52
Identity = 105/155 (67.74%), Postives = 120/155 (77.42%), Query Frame = 2
Query:   80 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            F GKAV L+PS +E++  G+++MRKT +K+  +SSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR   +       + G  + FSEGGLD LG     +   +SILA  A
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPS--LVHAQSILAIWA 164          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 2.301e-51
Identity = 104/155 (67.10%), Postives = 118/155 (76.13%), Query Frame = 2
Query:   80 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            F GK V L+PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL AR   +      ++ G  + FSEGGLD LG     +   +SILA  A
Sbjct:   13 FAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGS-QIFSEGGLDYLGNPS--LVHAQSILAIWA 164          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.925e-51
Identity = 103/151 (68.21%), Postives = 115/151 (76.16%), Query Frame = 2
Query:   86 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            G+AV L+P+  E+    + +MRKT SKSVSSGSPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R   +       + G  + FSEGGLD LG     +   +SILA  A
Sbjct:    5 GQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPS--LVHAQSILAIWA 152          
The following BLAST results are available for this feature:
BLAST of EY665226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CB24_TOBAC7.152e-5369.03Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC9.341e-5369.03Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2G_SOLLC2.081e-5268.39Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB25_NICPL2.081e-5268.39Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_TOBAC2.718e-5268.63Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC4.636e-5268.63Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB23_NICPL6.055e-5267.74Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB25_TOBAC7.908e-5267.74Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_PETSP2.301e-5167.10Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_CUCSA3.925e-5168.21Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665226 ID=EY665226; Name=EY665226; organism=Citrus sinensis; type=EST; length=1008bp
AGCTTCTATTGCTTACCCAGCTTCTGCTTCTCAATTAAATTCCTCAATGG
CAACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCCGTGAAC
CTCGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCG
TAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGG
ACAGAGTCAAGTACTTGGGCCCACTCTCTGGCGAGCCCCCAAGCTACTTG
ACTGGTGAGTTCCCTGGCGACTACGGTTGGGACACTGCCGGGCTTTCAGC
TGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCA
GATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCC
CGCAAACGGAGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCGGGAAGCT
CAAATCTTTCAGCGAGGGCGGGCTTGACTAACTTGGGAAAACCAAAGCTT
GGATTCCACGCCCAAAAAGCATCTTGGCCTTCGGGGCTTGGCCAGGTGGA
TCTTGATGGGGAAGCCTATGAAGGTTAAATAAATTGGCGGGAGGGGGCCG
TTTCGGTGAAAATTGAATGAACCCATTGTAACACCAAGTGGATAACTTTG
AACCCATTTGGGGATTGGGGATGAAAAAACCCGAAAGGTTTTTTGTTAAA
TCCTCAAAAGGATAAAGGAATACACAATAAATGGAAGGGTTTGGAAAAGG
ATTCCTCCATGTATTGGTTTTAAAACGAATAAAAAAAGAAAAGGATACAC
CACGAAAAGAGAAACAGGTAATAGAAATTATTGGCTAATAAAATAATTGG
ACGTAAATCATTAAACCAAAAACATTGAAGGCCAGAGGGTGAGACAAGCA
CTACCATAAAATGATTTGATGAATGCAAAGGGAGAGAAAGAAGCATTGTA
GTTATGAAGTAATTAATTACTAAAAAAAATTTTGAATACCTATGACATTT
ATGGGTGG
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