EY665225

Overview
NameEY665225
Unique NameEY665225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1052
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.249e-55
Identity = 104/122 (85.25%), Postives = 110/122 (90.16%), Query Frame = 1
Query:    1 QTMKDRWTPLAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            QT KD+W  LAYD SDDQQDIT GKG VD+LFQAPM +GTHY+VMSSYDYISQGLR YNLDN MDG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVF KMGI P
Sbjct:   65 QTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINP 186          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.249e-55
Identity = 104/122 (85.25%), Postives = 110/122 (90.16%), Query Frame = 1
Query:    1 QTMKDRWTPLAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            QT KD+W  LAYD SDDQQDIT GKG VD+LFQAPM +GTHY+VMSSYDYISQGLR YNLDN MDG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVF KMGI P
Sbjct:   65 QTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINP 186          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.826e-54
Identity = 101/122 (82.79%), Postives = 109/122 (89.34%), Query Frame = 1
Query:    1 QTMKDRWTPLAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            QT  DRW  LAYD SDDQQDIT GKG VDS+FQAPMGTGTH++V+SSY+Y+SQGLR YNLDN MDG YIAPAFMDKLVVHITKNF++LPNIKVPLILGIWGGKGQGKSFQCELV  KMGI P
Sbjct:   65 QTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINP 186          

HSP 2 Score: 22.3274 bits (46), Expect = 1.826e-54
Identity = 12/30 (40.00%), Postives = 16/30 (53.33%), Query Frame = 3
Query:  408 GKHPNLNKQRNMERTELIKKRKTGRRLLND 497
            G+   L +QR  E  +LIKK K     +ND
Sbjct:  200 GEPAKLIRQRYREAADLIKKGKMCCLFIND 229          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.527e-53
Identity = 100/122 (81.97%), Postives = 108/122 (88.52%), Query Frame = 1
Query:    1 QTMKDRWTPLAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            QT  DRW  LAYD SDDQQDIT GKG VDSLFQAPMG GTH +++SSY+YISQGLR Y+ DNTMDGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVF KMGI P
Sbjct:   53 QTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP 174          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 5.803e-53
Identity = 99/122 (81.15%), Postives = 107/122 (87.70%), Query Frame = 1
Query:    1 QTMKDRWTPLAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            QT KDRW  LA+D SDDQQDIT GKG VDSLFQAP G+GTH+++MSSY+YIS GLR YN DN MDG YIAPAFMDKLVVHITKNFM+LPN+KVPLILGIWGGKGQGKSFQCELVF KM I P
Sbjct:   65 QTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISP 186          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 9.741e-53
Identity = 100/122 (81.97%), Postives = 108/122 (88.52%), Query Frame = 1
Query:    1 QTMKDRWTPLAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            QT +DRW  LAYD SDDQQDIT GKG VDSLFQAP G GTH +V+SSY+Y+SQGLRTY+ DNTM G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVF KMGI P
Sbjct:   56 QTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP 177          

HSP 2 Score: 21.557 bits (44), Expect = 9.741e-53
Identity = 11/30 (36.67%), Postives = 16/30 (53.33%), Query Frame = 3
Query:  408 GKHPNLNKQRNMERTELIKKRKTGRRLLND 497
            G+   L +QR  E  ++IKK K     +ND
Sbjct:  191 GEPAKLIRQRYREAADIIKKGKMCCLFIND 220          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 2.815e-52
Identity = 97/122 (79.51%), Postives = 106/122 (86.89%), Query Frame = 1
Query:    1 QTMKDRWTPLAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            QT +DRW  LAYD SDDQQDIT GKG VD+LFQAPMG GTH +V+SSYDYISQG ++YN DN MDG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVF KMGI P
Sbjct:   61 QTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITP 182          

HSP 2 Score: 23.8682 bits (50), Expect = 2.815e-52
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  408 GKHPNLNKQRNMERTELIKKRKTGRRLLND 497
            G+   L +QR  E ++LIKK K     +ND
Sbjct:  196 GEPAKLIRQRYREASDLIKKGKMSCLFIND 225          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 3.762e-52
Identity = 98/122 (80.33%), Postives = 105/122 (86.07%), Query Frame = 1
Query:    1 QTMKDRWTPLAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            QT  DRW  L  D SDDQQDIT GKG VDSLFQAP GTGTH++V+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLILGIWGGKGQGKSFQCELVF KMGI P
Sbjct:   69 QTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINP 190          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 8.380e-52
Identity = 95/122 (77.87%), Postives = 105/122 (86.07%), Query Frame = 1
Query:    1 QTMKDRWTPLAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            QT  DRW  L  D SDDQQDI  GKG VDSLFQAP GTGTH++V+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSFQCELVF KMGI P
Sbjct:   69 QTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINP 190          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.985e-51
Identity = 96/122 (78.69%), Postives = 103/122 (84.43%), Query Frame = 1
Query:    1 QTMKDRWTPLAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            QT  DRW  LAYD SDDQQDIT GKG VDSLFQAPM  GTHY+V+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI KNFM+LPNIKVPLILG+WGGKGQGKSFQCELVF KMGI P
Sbjct:   69 QTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINP 190          

HSP 2 Score: 22.7126 bits (47), Expect = 3.985e-51
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  408 GKHPNLNKQRNMERTELIKKRKTGRRLLND 497
            G+   L +QR  E ++LIKK K     +ND
Sbjct:  204 GEPAKLIRQRYREASDLIKKGKMCVLFIND 233          
The following BLAST results are available for this feature:
BLAST of EY665225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA2_LARTR1.249e-5585.25Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR1.249e-5585.25Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.826e-5482.79Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.527e-5381.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO5.803e-5381.15Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ9.741e-5381.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE2.815e-5279.51Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC3.762e-5280.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC8.380e-5277.87Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU3.985e-5178.69Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-D12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665225 ID=EY665225; Name=EY665225; organism=Citrus sinensis; type=EST; length=1052bp
CAGACCATGAAGGACAGATGGACCCCCCTTGCCTACGACGAATCTGATGA
CCAGCAAGACATCACCCCAGGAAAAGGTGCTGTGGACTCTCTGTTCCAAG
CCCCCATGGGAACCGGAACTCACTATTCTGTCATGAGTTCTTATGACTAC
ATCAGCCAAGGTCTCCGCACATACAACTTGGACAACACGATGGACGGTCT
CTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGA
ACTTCATGTCCCTGCCCAACATCAAGGTTCCTCTCATCTTGGGTATATGG
GGAGGCAAAGGGCAAGGAAAATCATTCCAATGTGAGCTTGTTTTCCCCAA
GATGGGCATCTAACCCAATTATGAAGATTGGCGAAAAAATAGGAAATGGA
AATGCTTGGAAAACACCCAAACTTGAACAAGCAGAGGAACATGGAGAGAA
CTGAACTTATAAAAAAGAGGAAGACGGGCAGACGACTATTAAATGACTAG
ATGAGGAGCTGAAAAGAAGGTACCGCCAACAAATATCATTATATAACATG
ATGATTTACAATATACTCAATAATTTGCTAATAACTAGATTAGGTTATAT
ACCATAGCTCGTGACAAACAGGAGAATAGCCTAGAGAAAAAAATAAAAAA
CAGATACAAAATTCAATGATAATAAAACATACAAATAATAGAAGCAAAAA
AATAAAAATATAAAAAACAAAAAGAGAAATAAGGATATCGATTACAAAAT
TATTTGAGTCATCAATTGCAAGCATAAATGCATCTTATATCTGAATCGAT
CAATCTTTACTTTGAGACTTAAACCCCTCGTATCCAGTTCTAATTAATGT
AAAATGATGTGAAGGGTTATGTGTTTCTAACGAACTGATTTTCGATAAAA
TAGTACTACTGTAAGATATCTATAGAGGAAAATGATTACTTATAAATGTT
TTATAAAACAAATTAAAAATGTGAACATAATATACTAAACAAGATAATTA
CAGATAAATACAAAAATAGAAAACACTATTGAATCAAAAAATCAAAAATA
AC
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