EY665216

Overview
NameEY665216
Unique NameEY665216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1014
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665216 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 8.765e-59
Identity = 130/214 (60.75%), Postives = 150/214 (70.09%), Query Frame = 1
Query:   46 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP*NPLQEWSESSAKQFGSRLALKYSLKV----ALTILATPTSFLLRTILAIRGLPRLWLRGFW*KEKKLGGRPSLGEETETPLSPGGGIFYTPLVRAYKP 675
            MATSAIQQSAFAGQTAL+QSNE V K+G   GGR++MRRTVKSAP SIWYGPDRPKYLGPFS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFP     E    +  +FG  +  K   ++     L  L  P     ++ILAI    ++ L GF  +  ++GG P LGE  + P+ PGG   + PL  A  P
Sbjct:    1 MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP-----EILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAC-QVVLMGFV-EGYRVGGGP-LGEGLD-PIYPGGA--FDPLGLADDP 203          
BLAST of EY665216 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.653e-57
Identity = 130/214 (60.75%), Postives = 147/214 (68.69%), Query Frame = 1
Query:   46 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP*NPLQEWSESSAKQFGSRLALKYSLKV----ALTILATPTSFLLRTILAIRGLPRLWLRGFW*KEKKLGGRPSLGEETETPLSPGGGIFYTPLVRAYKP 675
            MATSAIQQSAFAGQTAL+  NE VRK+G   GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFP     E    +   FG  +  K   ++     L  L  P     ++ILAI    ++ L GF  +  ++GG P LGE  +  + PGG   + PL  A  P
Sbjct:    1 MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP-----EILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WAAQVVLMGFV-EGYRVGGGP-LGEGLD-KIYPGGA--FDPLGLADDP 203          
BLAST of EY665216 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.159e-57
Identity = 129/214 (60.28%), Postives = 147/214 (68.69%), Query Frame = 1
Query:   46 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP*NPLQEWSESSAKQFGSRLALKYSLKV----ALTILATPTSFLLRTILAIRGLPRLWLRGFW*KEKKLGGRPSLGEETETPLSPGGGIFYTPLVRAYKP 675
            MATSAIQQSAF G+T LRQ NEF+RK G     R TMRRTVKSAP+SIWYGPDRPKYLGPFSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FP     E  E +  +FG  +  K   ++     L  L  P     ++ILAI    ++ L GF  +  ++GG P LGE  + PL PGG   + PL  A  P
Sbjct:    1 MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFP-----ELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAI-WATQVVLMGFV-EGYRVGGGP-LGEGLD-PLYPGGA--FDPLGLADDP 203          
BLAST of EY665216 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 8.204e-57
Identity = 127/214 (59.35%), Postives = 148/214 (69.16%), Query Frame = 1
Query:   46 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP*NPLQEWSESSAKQFGSRLALKYSLKV----ALTILATPTSFLLRTILAIRGLPRLWLRGFW*KEKKLGGRPSLGEETETPLSPGGGIFYTPLVRAYKP 675
            MATSAI+QSAFAGQTAL+  NE VRK+G  +GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFP     E    +  +FG  +  K   ++     L  L  P     ++ILA+    ++ L G   +  ++GG P LGE  +  + PGG   + PL  A  P
Sbjct:    1 MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP-----EILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAV-WASQVVLMGLI-EGYRVGGGP-LGEGLD-KIYPGGA--FDPLGLADDP 203          
BLAST of EY665216 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.399e-56
Identity = 129/214 (60.28%), Postives = 149/214 (69.63%), Query Frame = 1
Query:   46 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP*NPLQEWSESSAKQFGSRLALKYSLKV----ALTILATPTSFLLRTILAIRGLPRLWLRGFW*KEKKLGGRPSLGEETETPLSPGGGIFYTPLVRAYKP 675
            MA SAIQ SAFAGQTAL+Q +E VRKVGV+DG R +MRRTVK+ PQSIWYG DRPK+LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC+FP     E    +  QFG  +  K   ++     L  L  P     ++ILAI    ++ L G   +  ++GG P LGE  + PL PGG   + PL  A  P
Sbjct:    1 MAASAIQSSAFAGQTALKQRDELVRKVGVSDG-RFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFP-----ELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAI-WATQVVLMGLI-EGYRVGGGP-LGEGLD-PLYPGGA--FDPLGLADDP 202          
BLAST of EY665216 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 2.387e-56
Identity = 126/214 (58.88%), Postives = 146/214 (68.22%), Query Frame = 1
Query:   46 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP*NPLQEWSESSAKQFGSRLALKYSLKV----ALTILATPTSFLLRTILAIRGLPRLWLRGFW*KEKKLGGRPSLGEETETPLSPGGGIFYTPLVRAYKP 675
            MATS IQQSAFAGQT L+  NE VRKVG  +GGR++MRRT+KSAP+SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFP     E    +  +FG  +  K   ++     L  L  P     ++ILAI     + +     +  ++GG P LGE  +  L PGG   + PL  A  P
Sbjct:    1 MATSTIQQSAFAGQTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP-----ELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAV--EGYRVGGGP-LGEGLD-QLYPGGA--FDPLGLAEDP 202          
BLAST of EY665216 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 7.679e-55
Identity = 126/214 (58.88%), Postives = 144/214 (67.29%), Query Frame = 1
Query:   46 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP*NPLQEWSESSAKQFGSRLALKYSLKV----ALTILATPTSFLLRTILAIRGLPRLWLRGFW*KEKKLGGRPSLGEETETPLSPGGGIFYTPLVRAYKP 675
            MAT AIQQSAF GQ   +  NEF+RKVG    GRITMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFP     E    +  +FG  +  K   ++     L  L  P     ++ILAI    ++ L GF  +  ++GG P LGE  +  + PGG   + PL  A  P
Sbjct:    1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP-----EILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAC-QVVLMGFV-EGYRVGGGP-LGEGLD-KIYPGGA--FDPLGLADDP 203          
BLAST of EY665216 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.499e-50
Identity = 123/214 (57.48%), Postives = 146/214 (68.22%), Query Frame = 1
Query:   46 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP*NPLQEWSESSAKQFGSRLALKYSLKV----ALTILATPTSFLLRTILAIRGLPRLWLRGFW*KEKKLGGRPSLGEETETPLSPGGGIFYTPLVRAYKP 675
            MA SA+ Q+     TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFP     E    +  +FG  +  K   ++     L  L  P     ++ILAI  + ++ L GF  +  ++GG P LGE  +  + PGG   + PL  A  P
Sbjct:    1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP-----EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV-QVVLMGFV-EGYRVGGGP-LGEGLD-KVYPGGA--FDPLGLADDP 201          
BLAST of EY665216 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.499e-50
Identity = 123/214 (57.48%), Postives = 146/214 (68.22%), Query Frame = 1
Query:   46 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP*NPLQEWSESSAKQFGSRLALKYSLKV----ALTILATPTSFLLRTILAIRGLPRLWLRGFW*KEKKLGGRPSLGEETETPLSPGGGIFYTPLVRAYKP 675
            MA SA+ Q+     TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFP     E    +  +FG  +  K   ++     L  L  P     ++ILAI  + ++ L GF  +  ++GG P LGE  +  + PGG   + PL  A  P
Sbjct:    1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP-----EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV-QVVLMGFV-EGYRVGGGP-LGEGLD-KVYPGGA--FDPLGLADDP 201          
BLAST of EY665216 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.957e-50
Identity = 124/216 (57.41%), Postives = 142/216 (65.74%), Query Frame = 1
Query:   46 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP*NPLQEWSESSAKQFGSRLALKYSLKV----ALTILATPTSFLLRTILAIRGLPRLWLRGFW*KEKKLGGRPSLGEETETPLSPGGGIFYTPLVRAYKP 675
            MAT SAIQ S+ AGQT LR Q NE V+KVG A   RITMRRTV+SAP+SIWYGPDRPKYLGPFSE TPSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIH RWAMLGALGCVFP     E    +  +FG  +  K   ++     L     P     ++ILAI    ++ L G     +  GG  +LGE  + PL PGG   + PL  A  P
Sbjct:    1 MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFP-----ELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWAC-QVVLMGLIEGYRVGGG--TLGEGLD-PLLPGGA--FDPLGLADDP 204          
The following BLAST results are available for this feature:
BLAST of EY665216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CB21_GOSHI8.765e-5960.75Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB26_PETSP1.653e-5760.75Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB215_PEA2.159e-5760.28Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_TOBAC8.204e-5759.35Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_LEMGI1.399e-5660.28Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SILPR2.387e-5658.88Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB24_SOLLC7.679e-5558.88Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_ORYSJ1.499e-5057.48Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.499e-5057.48Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH1.957e-5057.41Chlorophyll a-b binding protein type I, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-D03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665216 ID=EY665216; Name=EY665216; organism=Citrus sinensis; type=EST; length=1014bp
AAAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATATGGC
AACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGC
AATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATC
ACCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCC
AGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACT
TGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCA
GCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAG
CAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTTGAAATCCTC
TCCAAGAATGGAGTGAAAGTTCGGCGAAACAGTTTGGTTCAAGGCTGGCG
CTCAAATATTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTC
ATTCTTGCTCAGAACAATTTTGGCTATCCGGGGCCTGCCCAGGTTGTGGC
TTAGGGGTTTTTGGTAAAAGGAAAAAAAATTGGGAGGGCGGCCCTCTTTG
GGTGAAGAAACTGAAACCCCTTTATCCCCGGGTGGGGGCATATTTTATAC
CCCCTTGGTTAGGGCATATAAACCCCCGAACATTTTGCTTAATTTTAAAG
GGACCCGAGGAATTCCAAGAAAGGGGCTAAAGGGGTATATATCCTACATG
GAATGTGAACTCTATTTACACAGCCTTATGCACCAATGGAAAGGGCTCAA
ATAATATAAAAACCTGATACGACAACATATTAATCATTGACACCAAGGGG
CCTCTCAAAGACAACAGGGAGTAATAAGACACCTATAAATTTTTACTATC
CCGAAGAAAATAACAGAAAAAATAACATACTAAAATTGATGTCATTGCTA
CATTTTTTATATTTGATACAATTTATTAACAACATATAAATATACATTAG
CTCGGAGAAGAGCA
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