EY665211

Overview
NameEY665211
Unique NameEY665211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1030
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665211_ssr58 microsatellite EY665211_ssr58:58..69. BLAST: Citrus ESTs to Prunus persica proteins V1
EY665211_ssr161 microsatellite EY665211_ssr161:161..172. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665211 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 9.385e-16
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  211 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGL-ANPSDVPRCDICENAPAFFL-L*DRREFPVLCMRYD 444
            C+VCE+A A + C ADEAALC +CDEK+H  NKLA +H RV L A+ S +P+CDIC+ A  FF  L DR    +LC + D
Sbjct:    5 CNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDR---ALLCRKCD 81          
BLAST of EY665211 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.360e-14
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 1
Query:  211 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS-DVPRCDICENAPAF-FLL*DR 411
            CDVCE A A + C ADEAALC  CD ++H  NKLAS+H R+ L + S   PRCDIC+   AF F + DR
Sbjct:    5 CDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDR 73          

HSP 2 Score: 23.8682 bits (50), Expect = 7.360e-14
Identity = 8/24 (33.33%), Postives = 14/24 (58.33%), Query Frame = 2
Query:  398 YCEIDGSSLCFACDMTVHVGGKKN 469
            +C  D + LC  CD ++HV   ++
Sbjct:   68 FCVEDRALLCRDCDESIHVANSRS 91          
BLAST of EY665211 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.083e-13
Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  208 LCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPA 390
            LCD C+S AA LFC AD A LC  CD K+H  NKLASRH RV L        C++CE APA
Sbjct:    7 LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL--------CEVCEQAPA 59          

HSP 2 Score: 25.0238 bits (53), Expect = 2.083e-13
Identity = 7/17 (41.18%), Postives = 11/17 (64.71%), Query Frame = 2
Query:  401 CEIDGSSLCFACDMTVH 451
            C+ D ++LC  CD  +H
Sbjct:   63 CKADAAALCVTCDRDIH 79          
BLAST of EY665211 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.688e-13
Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  208 LCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPA 390
            LCD C+SA A L+C  D A LC SCD KVH  NKLASRH RV +        C++CE APA
Sbjct:    5 LCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM--------CEVCEQAPA 57          

HSP 2 Score: 25.0238 bits (53), Expect = 2.688e-13
Identity = 7/17 (41.18%), Postives = 11/17 (64.71%), Query Frame = 2
Query:  401 CEIDGSSLCFACDMTVH 451
            C+ D ++LC  CD  +H
Sbjct:   61 CKADAAALCVTCDRDIH 77          
BLAST of EY665211 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.489e-13
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 1
Query:  211 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFL 399
            CD C S A  ++C AD A LC SCD +VH  N++ASRH RV +        C+ CE APA FL
Sbjct:   20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV--------CESCERAPAAFL 74          

HSP 2 Score: 31.187 bits (69), Expect = 3.489e-13
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:  392 SFYCEIDGSSLCFACDMTVH 451
            +F CE D +SLC ACD  VH
Sbjct:   72 AFLCEADDASLCTACDSEVH 91          
BLAST of EY665211 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.494e-13
Identity = 32/62 (51.61%), Postives = 37/62 (59.68%), Query Frame = 1
Query:  211 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFF 396
            CD C SAA  ++C AD A LC SCD +VH  N+LASRH RV +        C  CE APA F
Sbjct:   12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV--------CQSCERAPAAF 65          

HSP 2 Score: 29.6462 bits (65), Expect = 3.494e-13
Identity = 9/20 (45.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:  392 SFYCEIDGSSLCFACDMTVH 451
            +F+C+ D +SLC  CD  +H
Sbjct:   64 AFFCKADAASLCTTCDSEIH 83          
BLAST of EY665211 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.497e-13
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1
Query:  211 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFL 399
            CD C SAA  ++C AD A LC +CD +VH  N++ASRH RV +        C  CE+APA FL
Sbjct:   16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV--------CQSCESAPAAFL 70          

HSP 2 Score: 29.6462 bits (65), Expect = 3.497e-13
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:  392 SFYCEIDGSSLCFACDMTVH 451
            +F C+ D +SLC ACD  +H
Sbjct:   68 AFLCKADAASLCTACDAEIH 87          
BLAST of EY665211 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.712e-13
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  211 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS----DVPRCDICENAPAFFLL*DRREFPVLCMRYDCS 450
            CDVC+   A +FC ADEA+LC  CD +VH  NKLAS+H+R  L  PS      P CDIC++  A  LL  +++  +LC   D S
Sbjct:    5 CDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKA--LLFCQQDRAILCKDCDSS 86          
BLAST of EY665211 vs. ExPASy Swiss-Prot
Match: STH_ARATH (Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.820e-12
Identity = 39/69 (56.52%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  211 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS-DVPRCDIC-ENAPAFFLL*DR 411
            CDVCE A A L C ADEAALC  CD +VH  NKLAS+H R+ L + S   P CDIC E A   F + DR
Sbjct:    5 CDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDR 73          
The following BLAST results are available for this feature:
BLAST of EY665211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
STHY_ARATH9.385e-1653.75Probable salt tolerance-like protein At1g78600 OS=... [more]
STO_ARATH7.360e-1455.07Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
COL3_ARATH2.083e-1357.38Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL4_ARATH2.688e-1355.74Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
CONS_ARATH3.489e-1349.21Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL1_ARATH3.494e-1351.61Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL2_ARATH3.497e-1349.21Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
STHX_ARATH9.712e-1346.43Probable salt tolerance-like protein At1g75540 OS=... [more]
STH_ARATH4.820e-1256.52Salt tolerance-like protein OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665211 ID=EY665211; Name=EY665211; organism=Citrus sinensis; type=EST; length=1030bp
CCACGCGTCCGACTCAATCGAGCTCTCTAATCTAATCTGTTTCTGAACTT
GTTGGATTCATCATCATCATCTTTGCATTAGTTTGGTTTCGCCAGTGAAA
AATACGATGTCGTTTCCGAGACAGAGATAGCTCGAATGAAAAAGTAGAGA
GATTAGAATAGATTGATTGATTGAACCAAAAGAAAAAGAAACAGAAAAAT
GCGAACGCTTTGCGACGTGTGTGAAAGCGCAGCTGCGATTCTTTTCTGCG
CTGCTGATGAGGCCGCTCTTTGCCGCTCTTGCGACGAAAAGGTCCATATG
TGCAATAAGCTTGCTAGTCGTCATGTGAGGGTAGGGCTTGCTAACCCCAG
TGATGTCCCACGCTGTGACATCTGTGAAAATGCACCTGCTTTCTTTTTAC
TGTGAGATAGACGGGAGTTCCCTGTGCTTTGCATGCGATATGACTGTTCA
TGTTGGTGGAAAAAAAAACCCATGGGAGATATTCTCCTTTTTGAGGAGAA
AGTTGAGTTTTCAGGGGACAAGGCTGGGTCGTTTGGGAGAACTGGCTCTG
CCTTCCCTTGATTAAAAAAAAATAACGAGGGGACCCGACTCTACCATTTT
GGGATTATGGCTGGAGAAAACCCGCAAAATCCCGGGGGGCTCCCCCCTTT
CCAAGGGTTTGAGGGAATGGGTAGAGGGGAGGGGAAAGGGGGGACATTAA
ATTTTTTGGTTTTTCTTGGGGGAGGGCCCAATGTGGGGGGGCATGCTTTC
AAAAAAATAAGGGGTTTGGGAGGTCTTTGAGGGGGACAAAAATCTATGAT
CTCCGTTGGGTGGGGGTTTCCAAGATTGTTATCTATTAAAAAAATAGATG
CGGGAAAAATTTAGAGAGATAAAAATTTTTTGTGTTTTTCTATGCTCCCT
ATTTCTTATTTGGATTAAACAATTTTATGAACCTCCGTCCGGTAGACCGG
GTACGAGAGAGTATAATAATTTTTACGGGGGGTGGACTATATTCATTGTT
GTGTGGGCGATATGCGATTATACGTGATTT
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