EY665174

Overview
NameEY665174
Unique NameEY665174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length338
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4881 contig Csv1_Contig4881:23..361. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665174 vs. ExPASy Swiss-Prot
Match: ATB15_ARATH (Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.452e-14
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 3
Query:    3 SMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 110
            SMGRPVSYERAVAWKVLNEEE AHCICF+FINWSFV
Sbjct:  801 SMGRPVSYERAVAWKVLNEEENAHCICFVFINWSFV 836          
BLAST of EY665174 vs. ExPASy Swiss-Prot
Match: HOX32_ORYSJ (Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. japonica GN=HOX32 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.503e-11
Identity = 27/36 (75.00%), Postives = 34/36 (94.44%), Query Frame = 3
Query:    3 SMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 110
            SMGRPVSYE+AVAWKVL++++T HC+ FMF+NWSFV
Sbjct:  824 SMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV 859          
BLAST of EY665174 vs. ExPASy Swiss-Prot
Match: HOX32_ORYSI (Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. indica GN=HOX32 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.503e-11
Identity = 27/36 (75.00%), Postives = 34/36 (94.44%), Query Frame = 3
Query:    3 SMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 110
            SMGRPVSYE+AVAWKVL++++T HC+ FMF+NWSFV
Sbjct:  824 SMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV 859          
BLAST of EY665174 vs. ExPASy Swiss-Prot
Match: ATHB8_ARATH (Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana GN=ATHB-8 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.348e-11
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 3
Query:    3 SMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 110
            SMGR V+YE+AV WKVLN++E  HCICFMF+NWSF+
Sbjct:  798 SMGRAVTYEKAVGWKVLNDDEDPHCICFMFLNWSFI 833          
The following BLAST results are available for this feature:
BLAST of EY665174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ATB15_ARATH1.452e-1494.44Homeobox-leucine zipper protein ATHB-15 OS=Arabido... [more]
HOX32_ORYSJ1.503e-1175.00Homeobox-leucine zipper protein HOX32 OS=Oryza sat... [more]
HOX32_ORYSI1.503e-1175.00Homeobox-leucine zipper protein HOX32 OS=Oryza sat... [more]
ATHB8_ARATH3.348e-1172.22Homeobox-leucine zipper protein ATHB-8 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-H05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665174 ID=EY665174; Name=EY665174; organism=Citrus sinensis; type=EST; length=338bp
CAAGCATGGGCAGACCGGTTTCTTACGAGAGGGCTGTGGCTTGGAAGGTA
CTTAATGAAGAAGAGACTGCTCATTGCATCTGCTTTATGTTCATCAACTG
GTCATTTGTGTAAAATACTTTGGACCAGCGAAGGTCTGTATTTTGTTGGA
TTGTATTATCTTTTGGCCATGGAAACCTTGGATACTTAGGACAGATAAGG
TTGTTAGGCCTATGTTACTTCTCTCTAAACTGCTTTGCGTTTGTATTGCT
TGGAAGTTATGCTACTAGCCTATAATCAGTCAATAGATGTGTGAAACTTC
CATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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