EY665165

Overview
NameEY665165
Unique NameEY665165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665165_ssr401 microsatellite EY665165_ssr401:401..420. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8001 contig Csv1_Contig8001:1..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY665165 vs. ExPASy Swiss-Prot
Match: AB3F_ARATH (ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.448e-25
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:   28 LDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 210
            LDLDAVEALIQGLVLFQGGI MVSHDEHLISGSV+ELWVVS+G+  PFHGTFHDYKK+LQS
Sbjct:  653 LDLDAVEALIQGLVLFQGGICMVSHDEHLISGSVDELWVVSDGRIAPFHGTFHDYKKLLQS 713
The following BLAST results are available for this feature:
BLAST of EY665165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AB3F_ARATH1.448e-2588.52ABC transporter F family member 3 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-G07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665165 ID=EY665165; Name=EY665165; organism=Citrus sinensis; type=EST; length=465bp
CCACGCGTCCGCCGATGTACACTTTGTCTGGATTTGGATGCAGTGGAGGC
ACTAATTCAAGGCCTTGTTTTGTTCCAAGGAGGGATTCTCATGGTTAGTC
ACGACGAACATCTGATATCTGGAAGTGTAGAGGAGCTATGGGTTGTATCA
GAAGGCAAGGCGACACCATTCCATGGGACGTTCCACGATTACAAGAAGAT
GCTTCAGTCTCGTTAAATACTATAGAGGTTTATTGCGGGAAATCAGAGGG
ATTTTGACACTTACAATTACAGAACAGTTGAGTTTTTCTCAGTTATACTG
AATGGGATATACAAGTCTATTTATGCTATTAAAAAAAAAATGTTTTTTCG
AGAATGAGGCTTGCGGGGGAGCTTTTCTGCTCACTCTTGCCACTGTACTT
TTTATTTATTTATTTATTTATTAATATCAAATAGAAACTATTATTATACA
AAAAAAAAAAAAAAA
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