EY665161

Overview
NameEY665161
Unique NameEY665161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9274 contig Csv1_Contig9274:1021..1722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665161 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.310e-67
Identity = 126/166 (75.90%), Postives = 136/166 (81.93%), Query Frame = 3
Query:   39 KEDRIGVCKGISRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAHQM--NVPVPEGCTDPTAENFDPTARSDDGSCQY 530
            +EDRIGVCKGI R DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVRKW          K LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FYG  A Q   NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  309 REDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of EY665161 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 7.035e-66
Identity = 119/166 (71.69%), Postives = 141/166 (84.94%), Query Frame = 3
Query:   39 KEDRIGVCKGISRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAHQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 533
            ++DR+GVCKGI R DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW          K LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN DA+++G+FYG+ A Q  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  300 RDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of EY665161 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.956e-65
Identity = 115/165 (69.70%), Postives = 140/165 (84.85%), Query Frame = 3
Query:   39 KEDRIGVCKGISRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAHQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 533
            ++DRIGVCKGI + DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW          K LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYGK A Q  +PVPEGCTD  A+N+DPTARSDDGSC YT
Sbjct:  299 RDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of EY665161 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 1.016e-64
Identity = 119/164 (72.56%), Postives = 132/164 (80.49%), Query Frame = 3
Query:   39 KEDRIGVCKGISRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAHQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 530
            +EDRIGVCKGI R D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK+          K LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+AN DAI  G FYGK A Q+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  309 REDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of EY665161 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.242e-62
Identity = 113/166 (68.07%), Postives = 133/166 (80.12%), Query Frame = 3
Query:   39 KEDRIGVCKGISRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAHQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 536
            +EDRIGVC GI + D V  + +VKLVD FPGQSIDFFGALRARVY DEVRKW          K LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN+DAI  G F+GKAA Q+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  307 REDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of EY665161 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.390e-52
Identity = 101/129 (78.29%), Postives = 110/129 (85.27%), Query Frame = 3
Query:   39 KEDRIGVCKGISRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 425
            +EDRIGVC GI R+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN DA+ +G FYG
Sbjct:  309 REDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of EY665161 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.393e-51
Identity = 96/130 (73.85%), Postives = 112/130 (86.15%), Query Frame = 3
Query:   39 KEDRIGVCKGISRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGK 428
            +EDRIGVCKGI R DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN+DA+++G FYGK
Sbjct:  296 REDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425          
BLAST of EY665161 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.575e-49
Identity = 93/128 (72.66%), Postives = 109/128 (85.16%), Query Frame = 3
Query:   39 KEDRIGVCKGISRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 422
            ++DR+GVCKGI R D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG ANEDAI+SG+F+
Sbjct:  311 RDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of EY665161 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.056e-49
Identity = 94/127 (74.02%), Postives = 108/127 (85.04%), Query Frame = 3
Query:   39 KEDRIGVCKGISRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 419
            +EDRIGVCKGI R DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN+DAI+ G F
Sbjct:  309 REDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of EY665161 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 8.640e-48
Identity = 91/128 (71.09%), Postives = 109/128 (85.16%), Query Frame = 3
Query:   39 KEDRIGVCKGISRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 422
            +EDRIGVCKGI R D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR+W          + LVNSKE  PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGEANEDA+++G+F+
Sbjct:  305 REDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432          
The following BLAST results are available for this feature:
BLAST of EY665161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_LARTR8.310e-6775.90Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ7.035e-6671.69Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU5.956e-6569.70Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.016e-6472.56Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.242e-6268.07Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO3.390e-5278.29Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU6.393e-5173.85Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU1.575e-4972.66Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR2.056e-4974.02Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE8.640e-4871.09Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-G03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665161 ID=EY665161; Name=EY665161; organism=Citrus sinensis; type=EST; length=703bp
GTACTGGNTCCGNATTCCCGGGCCGACCCCGCGTCCGCAAGGAGGACCGT
ATTGGTGTGTGCAAGGGTATCTCCAGGAATGACAATGTGGCTGATGACGA
CATTGTCAAGCTTGTCGACACCTTCCCCGGCCAATCCATTGATTTCTTTG
GAGCCCTGAGGGCCAGAGTCTATGATGATGAGGTGAGGAAGTGGATCTCT
GGTGTTGGTGTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAGC
AGCCCCAACATTCGAGCAACCAAGGATGACAATGGAGAAGCTGCTCGAGT
ACGGAAACATGATTGTGCAAGAGCAAGAGAATGTGAAGAGAGTTCAGTTG
GCTGACAAGTATTTGAGTGAGGCCGCTCTTGGTGAAGCTAATGAAGATGC
TATTCAGAGTGGAAATTTCTATGGCAAAGCAGCCCATCAAATGAATGTTC
CAGTTCCTGAAGGATGTACTGATCCTACTGCAGAAAACTTTGATCCAACT
GCAAGAAGTGATGATGGAAGCTGCCAATACACGCTTTAGGCCTTGTTTCT
AAGGGTTGAGAAGTGTCGCACTCTGCTTAGGATGTGAGATATTCAAATAA
TATTGGTGCATTTTCATTTCTTTTTTAATCAGATAGAATCCTCTAATTTT
GTGTTATATCACAACTCTTTATTCGATCTTTAAAAAAAAAAAAAAAAAAA
AAA
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