EY665143

Overview
NameEY665143
Unique NameEY665143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9549 contig Csv1_Contig9549:437..1295. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665143 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.199e-55
Identity = 108/174 (62.07%), Postives = 130/174 (74.71%), Query Frame = -1
Query:  252 AFSMHAVLLTIIXLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSS 773
            AFS+HAV++T + LFQI IYERG QKVS++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKT            F+ QHYVLYP KK   S +  ++   EPL+ SS
Sbjct:   94 AFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKSTVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHYVLYPEKKVSKSPETGEESN-EPLIDSS 266          
BLAST of EY665143 vs. ExPASy Swiss-Prot
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.381e-27
Identity = 61/156 (39.10%), Postives = 94/156 (60.26%), Query Frame = -1
Query:  309 AFSMHAVLLTIIXLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAKKA 773
            AF++H  +LT I + Q  IY+RG QK SK+ + I +++W++  V   +   N  +WLW+IN+++ +++ +T IKYIPQA +NF+ KST G+S+ N+LLDF GG  +  QM +   D  +W  F G+  K             FI QHY+LY   K+
Sbjct:   87 AFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGWSVHNVLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQHYILYRNPKS 242          
BLAST of EY665143 vs. ExPASy Swiss-Prot
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 8.379e-25
Identity = 62/150 (41.33%), Postives = 89/150 (59.33%), Query Frame = -1
Query:  324 FSMHAVLLTIIXLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLY 770
            FS+HAV+LT+I + Q  +YERG Q+VS  ++  + + WL A V   VA     +WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K             F  QH+ LY
Sbjct:  208 FSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLY 357          
BLAST of EY665143 vs. ExPASy Swiss-Prot
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.094e-24
Identity = 59/153 (38.56%), Postives = 90/153 (58.82%), Query Frame = -1
Query:  315 FSMHAVLLTIIXLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHS-WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAK 770
            FS+HAV LT++ + Q  +YERG Q+VS ++++ + + WL   +   +A    + WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K             F  QH+ LY  K
Sbjct:  208 FSLHAVALTLVVIVQCLLYERGSQRVSWLAISFLVLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQHFCLYRKK 360          
BLAST of EY665143 vs. ExPASy Swiss-Prot
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.429e-24
Identity = 64/153 (41.83%), Postives = 87/153 (56.86%), Query Frame = -1
Query:  315 FSMHAVLLTIIXLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAK 770
            FS+HAV LT+I + Q  +YERG Q+VS  S+  + + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  KST G+SIG +LLDF GG  +  QM +QS + + W   +G+  K             F  QH+ LY  K
Sbjct:  208 FSLHAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLYRKK 360          
BLAST of EY665143 vs. ExPASy Swiss-Prot
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.064e-23
Identity = 65/179 (36.31%), Postives = 98/179 (54.75%), Query Frame = -1
Query:  243 FSMHAVLLTIIXLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHS---WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHP 770
            FS+HA+  T I + Q   Y+R  Q+VS I+  I+++   A  V     L   S   WL  + + + +++ +T+IKY+PQA+MN+RRKST G+SIGNILLDF GG  +  QMI+ + + + WV+ +G+  K             F+ QHYV Y   +   SS L+    V+     S  P
Sbjct:  213 FSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAI--FAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTSGWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLFDVFFMLQHYVFYRHSRESSSSDLTTVTDVQNRTNESPPP 389          
BLAST of EY665143 vs. ExPASy Swiss-Prot
Match: CTNS_CAEEL (Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.214e-20
Identity = 59/152 (38.82%), Postives = 82/152 (53.95%), Query Frame = -1
Query:  321 FSMHAVLLTIIXLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVA--LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYP 770
            F++HA L   I + Q   YER  Q VS   +A++ +V ++   C   A  L     L  +   + I++ +T  KY PQA  N+ RKST G+SIGNI+LDF GG  +  QMI+Q+++ N W  FY N  K             F+ QHYVLYP
Sbjct:  210 FAVHAFLACFITILQCLFYERDNQSVSSKCIALM-IVLISFGFCSAAATVLRKIQLLSFVTSLSYIKMAVTCCKYFPQAYFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLYP 360          
BLAST of EY665143 vs. ExPASy Swiss-Prot
Match: CTNS_CAEBR (Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.384e-19
Identity = 59/182 (32.42%), Postives = 93/182 (51.10%), Query Frame = -1
Query:  231 FSMHAVLLTIIXLFQIAIYERGVQKVS-KISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAKKAVISSKLSKDG-GVEPLLKSSDHPESEN 770
            F++HA L   + + Q   YER  Q++S K  + I+ +V           L   + L  +   + I++ +T  KY PQA  N++RKST G+SIGNILLDF GG  +  QM++Q+I+ N W  FY N  K             F+ QHY LYP  +   +     D    + +++ ++H  ++N
Sbjct:  209 FAVHAFLACFVTILQCIFYERDQQRISTKCIILIIGLVSFGFVSVVVTVLNKITILDFVVSLSYIKMAVTCCKYFPQAYFNYQRKSTVGWSIGNILLDFTGGSLDILQMVLQAINVNDWSAFYANPVKFGLGFVSIFFDIIFMIQHYALYPDAEVPHNEYHGVDNPDPDSIVRDAEHGAADN 390          
The following BLAST results are available for this feature:
BLAST of EY665143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CTNS_ARATH1.199e-5562.07Cystinosin homolog OS=Arabidopsis thaliana GN=At5g... [more]
CTNS_DICDI1.381e-2739.10Cystinosin homolog OS=Dictyostelium discoideum GN=... [more]
CTNS_HUMAN8.379e-2541.33Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2[more]
CTNS_BOVIN1.094e-2438.56Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1[more]
CTNS_MOUSE1.429e-2441.83Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1[more]
CTNS_DROME2.064e-2336.31Cystinosin homolog OS=Drosophila melanogaster GN=C... [more]
CTNS_CAEEL6.214e-2038.82Cystinosin homolog OS=Caenorhabditis elegans GN=ct... [more]
CTNS_CAEBR1.384e-1932.42Cystinosin homolog OS=Caenorhabditis briggsae GN=c... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665143 ID=EY665143; Name=EY665143; organism=Citrus sinensis; type=EST; length=857bp
TTTTTTTAAACACTAGTATATGGTTTAAAATTAATAGCTTTAACCAATTA
CAGGAATCATATTTGATAGTAATTTCTAATTCCAGAACATGACTGTTTCT
TCCTATACACAAGTAAGAAAATCATACAAATTGCTGATGTGGTGTGCATG
CAGCAACAATATGGTTTGATTTCTATGTGGTGTAAATAGATTGCGTCCTC
ACAAATTGTGTTGGCATTTCACCTTTATACATTTTCTGACTCTGGGTGAT
CAGAAGACTTAAGAAGTGGCTCTACACCACCATCTTTGCTAAGTTTAGAA
GAGATTACCGCTTTCTTGGCAGGATATAGCACATAATGCTGACATATGAA
AAGAAGATCAAAGACTACGGATACCAGAGATAGCAATGTCTTCCCTATAT
TTCCATAAAAGTTAACCCAAGAATTTTGATCAATAGACTGAACAATCATC
TGTGAGTAATTAGTACACCCTCCAAGAAAATCAAGTAATATATTTCCAAT
GCTGAAACCATCTGTACTCTTTCGCCTAAAGTTCATGATGGCCTGTGGAA
TATACTTGATGAGTGTCATAATAACTTGAATAGCGTTAAAGAAGTTGATG
AGCCAAAGCCAAGAATGGTTTGGCAATGCTACGAAGAAACAAACTGCGGC
AGCCAACCAAACAACAGAGACAATTGCCATAGAAATCTTAGATACCTTCT
GAACACCACGTTCATAGATTGCAATTTGGAACAGGNNTATTATTGTCAAG
AGAACAGCATGCATTGAAAACGCACATCATTTGCTGCTACGGGAATATCT
GATCGCCGGCGTACTTCTGAAAGTACTGTGCTGAACGCGGGGCTAAAGAG
NAGACNA
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