EY665138

Overview
NameEY665138
Unique NameEY665138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4376 contig Csv1_Contig4376:491..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665138 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.512e-35
Identity = 73/82 (89.02%), Postives = 75/82 (91.46%), Query Frame = 2
Query:   14 FVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALNEVKC 259
            FVTYMKRFIKLLTPKL EE+QE FKKNIEGATKFLLSKLSDLQFFVGESMHDDG LVFAYY+ GATDPTFLY A AL EVKC
Sbjct:   87 FVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168          
BLAST of EY665138 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.671e-34
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = 2
Query:   14 FVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALNEVKC 259
            FVT+MKR+IK LTPKL  E+QE+FKK+IEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYK+GATDPTFLY A  L E+KC
Sbjct:   87 FVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168          
BLAST of EY665138 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.022e-33
Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 2
Query:   14 FVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALNEVKC 259
            F+ Y+K+FIKLLTPKL  E+QE FKKNIEGATKFLL KL D +FFVGESMHDD C+VFAYY+EGATDPTFLY+A AL EVKC
Sbjct:   87 FIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168          
BLAST of EY665138 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.259e-31
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 2
Query:   14 FVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALNEVKC 259
            FVT+MKRFIK LTPKL  E+QE+FKK+IEGATK+LLSK+ D QFFVGESM DD CLVFAYYK+GA DPTFLY A AL EVKC
Sbjct:   87 FVTFMKRFIKNLTPKLDAEQQELFKKHIEGATKYLLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYALKEVKC 168          
BLAST of EY665138 vs. ExPASy Swiss-Prot
Match: TCTP_MEDSA (Translationally-controlled tumor protein homolog OS=Medicago sativa GN=TCTP PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 5.032e-31
Identity = 62/82 (75.61%), Postives = 72/82 (87.80%), Query Frame = 2
Query:   14 FVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALNEVKC 259
            F+ ++KR+IKLLTPKL  E+QE+FKK+IEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GA DPTFLY A AL E+KC
Sbjct:   86 FLGFVKRYIKLLTPKLDAEKQELFKKHIEGATKYLLCKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFAYALKEIKC 167          
BLAST of EY665138 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.912e-30
Identity = 62/82 (75.61%), Postives = 68/82 (82.93%), Query Frame = 2
Query:   14 FVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALNEVKC 259
            FVT+MKR+IK LTPKL  E QE FKKNIE ATKFLL K+ DLQFFVGESMHDDG LVFAYYKEG+ DP FLY+A  L E+KC
Sbjct:   87 FVTFMKRYIKNLTPKLEGETQEAFKKNIEAATKFLLQKIKDLQFFVGESMHDDGALVFAYYKEGSADPPFLYIAPGLKEIKC 168          
BLAST of EY665138 vs. ExPASy Swiss-Prot
Match: TCTP_PEA (Translationally-controlled tumor protein homolog OS=Pisum sativum GN=TCTP PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.912e-30
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 2
Query:   14 FVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALNEVKC 259
            F+ ++K++IKLLTPKL  E+QE FKKNIEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GA DPTFLY + AL E+KC
Sbjct:   86 FLGFVKKYIKLLTPKLEAEKQEHFKKNIEGATKYLLGKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFSFALKEIKC 167          
BLAST of EY665138 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.912e-30
Identity = 63/82 (76.83%), Postives = 70/82 (85.37%), Query Frame = 2
Query:   14 FVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALNEVKC 259
            FVT+MKR+IK L+ KL  E+QE FKKNIEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GATDPTFLY +  L EVKC
Sbjct:   87 FVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168          
BLAST of EY665138 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 2.498e-30
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = 2
Query:   14 FVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALNEVKC 259
            F+ Y+K++IKLLTPKLSEE Q +FKK IEGATKFLL +LSD QFFVGE MHDD  LVFAYYKEG+T+PTFLY A  L EVKC
Sbjct:   87 FIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168          
BLAST of EY665138 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.262e-30
Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = 2
Query:   14 FVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALNEVKC 259
            F+ ++KR+IK L  KLSEERQ  FKKN+EGA K L+SKLSDLQFFVGESMHDDG +VFAYYK+GATDPTFLY AD L EVKC
Sbjct:   86 FLGFIKRYIKNLATKLSEERQAEFKKNVEGAAKMLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEVKC 167          
The following BLAST results are available for this feature:
BLAST of EY665138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TCTP_HEVBR1.512e-3589.02Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV1.671e-3482.93Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA7.022e-3378.05Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN2.259e-3178.05Translationally-controlled tumor protein homolog O... [more]
TCTP_MEDSA5.032e-3175.61Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC1.912e-3075.61Translationally-controlled tumor protein homolog O... [more]
TCTP_PEA1.912e-3074.39Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ1.912e-3076.83Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH2.498e-3074.39Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ3.262e-3075.61Translationally-controlled tumor protein homolog O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665138 ID=EY665138; Name=EY665138; organism=Citrus sinensis; type=EST; length=464bp
CCACGCGTCCGCGTTTGTAACATACATGAAGAGATTCATCAAGTTGCTGA
CGCCCAAGCTGAGTGAGGAGAGGCAGGAGATATTTAAGAAGAATATTGAG
GGAGCGACCAAGTTCTTGCTCTCGAAGCTCAGTGACCTTCAATTCTTTGT
TGGGGAGAGCATGCATGATGATGGCTGTCTTGTCTTTGCTTACTACAAGG
AAGGTGCGACCGACCCAACATTTTTGTATATGGCTGATGCATTGAACGAG
GTGAAGTGCTAAGCTGGGCTTCGAAGAGGAAGTGCCTGCTGTAGTTCTAA
TTTTAATTATTGCCCGCGGTTATTTTTATGTATCTTTTGTGCTGGTTTAC
TCGGGACTTGTGCTTGCTGTTTTTTAGTTTTTATTTTGACATAAACAATA
TGTTTTTCTGCTCTTAATTATTGGGTTTTATGGTTTGAGATTGAAAAAAA
NANNNNAAATAAAT
back to top