EY665135

Overview
NameEY665135
Unique NameEY665135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2376 contig Csv1_Contig2376:50..698. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
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BLAST of EY665135 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.514e-16
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 3 
Query:   18 AAQESTWLIQLMNDLHQPLDYTVLLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEMRQVKTDEQIADLFTKSLSVGKFEHFRRQLGMIQRMGANIE 335
            A +E+ WL  L+  ++  L+  + +Y DNQ  I +A NP  H R KH+++ YHF RE+V    I +  + T+ Q+AD+FTK L   +F   R +LG++Q   +N E
Sbjct: 1304 AVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLLQDDQSNAE 1409
[Close]
BLAST of EY665135 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 43/103 (41.75%), Postives = 67/103 (65.05%), Query Frame = 3 
Query:    6 AAAMAAQESTWLIQLMNDL--HQPLDYTVLLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEMRQVKTDEQIADLFTKSLSVGKFEHFRRQLGM 308
            AA    +E  WL + + +L  HQ  +Y V  YCD+QSAI L++N ++HARTKH++V YH++RE V  E +++ ++ T+E  AD+ TK +   KFE  +  +GM
Sbjct: 1226 AATETGKEMIWLKRFLQELGLHQK-EYVV--YCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325
The following BLAST results are available for this feature:
BLAST of EY665135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
COPIA_DROME1.514e-1637.74Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
POLX_TOBAC2.187e-1541.75Retrovirus-related Pol polyprotein from transposon... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-D10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665135 ID=EY665135; Name=EY665135; organism=Citrus sinensis; type=EST; length=649bp
ATCGAGCAGCAGCAATGGCAGCTCAAGAAAGCACGTGGCTGATACAACTA
ATGAATGATCTACATCAACCACTAGATTATACAGTTCTGTTGTACTGTGA
CAACCAATCGGCAATTCGGCTGGCGGAGAATCCTGTTTTTCATGCAAGAA
CTAAACATGTGGAAGTGCATTACCACTTTGTTAGGGAAAAAGTTCTGCAA
GAAGAGATTGAGATGAGGCAAGTCAAGACAGATGAACAAATTGCTGACTT
GTTTACAAAAAGCTTGAGTGTTGGAAAGTTTGAACATTTCCGTCGTCAGC
TTGGCATGATTCAAAGAATGGGGGCTAACATTGAGGGGGAGTGTTGAGAA
GTCAATATTAGCCCAAATAAGTCCACACCTAAATTAATTTGATGTCATTG
CTTACATCAATTTAGTTAGGTGAATATTAGCCCAAATAAGTCCACACCTA
AATTAATTTGATGTCATTGCTTACATCAATTTAGTTAGGTGAAAATTAGG
TATTTTTCCCATGTTTAATTTCAATGGTTTAAATTAGTTTGTGGTTATTT
TAATGAGTGGTTTAGATTGTTTCTTGTAACCTATAAATACCTCATTTGTA
TTTGAGTTTTATTATTCAACAATAAAAAGCTTTATTATANGCNNNANAN
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