EY665120

Overview
NameEY665120
Unique NameEY665120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:224..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665120 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 8.786e-55
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 1
Query:   16 KHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 339
            KHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LLTQ+KDGFAEGKDLV++VMS+MGEEQICALKDIGPK
Sbjct:   52 KHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of EY665120 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.556e-54
Identity = 99/108 (91.67%), Postives = 105/108 (97.22%), Query Frame = 1
Query:   16 KHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 339
            KHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+KDGFAEGKDLVL+VMS+MGEEQIC +KDIGPK
Sbjct:   52 KHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of EY665120 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.556e-54
Identity = 99/108 (91.67%), Postives = 105/108 (97.22%), Query Frame = 1
Query:   16 KHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 339
            KHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+KDGFAEGKDLVL+VMS+MGEEQIC +KDIGPK
Sbjct:   52 KHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of EY665120 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 5.695e-54
Identity = 98/108 (90.74%), Postives = 105/108 (97.22%), Query Frame = 1
Query:   16 KHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 339
            KHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD+ LLTQ+KDGF EGKDLV++VMS+MGEEQICALKDIGPK
Sbjct:   52 KHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of EY665120 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 5.695e-54
Identity = 98/109 (89.91%), Postives = 107/109 (98.17%), Query Frame = 1
Query:   16 KHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPKS 342
            KHGHAKCHFVGIDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE GNTKDDLRLPTDE LL+Q+KDGFAEGKDLV++VMS+MGEE+IC+LKDIGPK+
Sbjct:   52 KHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160          
BLAST of EY665120 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.826e-53
Identity = 96/108 (88.89%), Postives = 107/108 (99.07%), Query Frame = 1
Query:   16 KHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 339
            KHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NG+TKDDL+LPTD++LLTQ+KDGFA+GKDLV++VMS+MGEEQICALKDIGPK
Sbjct:   52 KHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of EY665120 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 6.296e-53
Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 1
Query:   16 KHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 339
            KHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL  +KDGFAEGKDLVL+VMS+MGEEQIC +KD+GPK
Sbjct:   52 KHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of EY665120 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 6.296e-53
Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 1
Query:   16 KHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 339
            KHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL  +KDGFAEGKDLVL+VMS+MGEEQIC +KD+GPK
Sbjct:   52 KHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of EY665120 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.074e-52
Identity = 97/108 (89.81%), Postives = 106/108 (98.15%), Query Frame = 1
Query:   16 KHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 339
            KHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD++LL+Q+KDGFAEGKDLV++VMS+MGEEQI ALKDIGPK
Sbjct:   52 KHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of EY665120 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.125e-52
Identity = 97/109 (88.99%), Postives = 103/109 (94.50%), Query Frame = 1
Query:   16 KHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPKS 342
            KHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL Q+K GF EGKDLVL+VMS+MGEEQICA+KDIG KS
Sbjct:   52 KHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDALLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKS 160          
The following BLAST results are available for this feature:
BLAST of EY665120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A2_NICPL8.786e-5592.59Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A5_SOLTU2.556e-5491.67Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A1_SOLLC2.556e-5491.67Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A_SENVE5.695e-5490.74Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A_MANES5.695e-5489.91Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A2_MEDSA2.826e-5388.89Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A1_TOBAC6.296e-5388.89Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL6.296e-5388.89Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A4_SOLTU1.074e-5289.81Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_SOLTU3.125e-5288.99Eukaryotic translation initiation factor 5A-1/2 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-C05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665120 ID=EY665120; Name=EY665120; organism=Citrus sinensis; type=EST; length=586bp
CCACGCGTCCGCTGGAAACACGGTCATGCTAAGTGCCACTTTGTTGGAAT
TGATATCTTCAGTGGAAAGAAGCTGGAAGATATTGTCCCCTCTTCTCATA
ACTGTGATGTTCCCCATGTCAACCGTACCGACTATCAGTTGATTGATATT
TCTGAGGATGGATTTGTGAGTTTGCTGACTGAAAATGGGAACACCAAGGA
TGATCTGAGGCTCCCAACCGATGAGACTCTGCTGACCCAGCTCAAGGACG
GTTTTGCTGAGGGGAAGGACTTGGTTTTGACTGTCATGTCTTCAATGGGC
GAGGAGCAGATCTGTGCCCTCAAGGATATTGGCCCAAAGTCGTAGTTGCG
CGATATGTGATTATCTTCTGTGTCTGGTTGCATCTGTTTTTTGGAAAAAT
ATTTTAATCATCTAGAGTTTGCCTTTAATATTTGTAGCGTCTTTGTTTTG
TGGTGAGAATTGCAAGCTGCCTGGAATATGTAGTTCTTTTGATTGGCGGC
TAAAAAATTTATGGTGTTCAATTTCTCTAATGAATTATAATGTTAGAAAG
AAATCGTCTTTGTTATTTAAAAAAAAAAAAAAAAAA
back to top