EY665116

Overview
NameEY665116
Unique NameEY665116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.105e-43
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEVTDP+YP GSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  121 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.105e-43
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEVTDP+YP GSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  170 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 9.280e-43
Identity = 83/86 (96.51%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  176 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.583e-42
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEVTDPLYP GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  182 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.067e-42
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEVTDP+YP GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  189 PLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.067e-42
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  182 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 2.067e-42
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP G+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  180 PLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.700e-42
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  182 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.700e-42
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  182 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.700e-42
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  182 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
The following BLAST results are available for this feature:
BLAST of EY665116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB22_CUCSA7.105e-4395.35Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA7.105e-4395.35Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_ORYSJ9.280e-4396.51Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB27_TOBAC1.583e-4295.35Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB2B_PINSY2.067e-4294.19Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB25_PETSP2.067e-4295.35Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_ORYSJ2.067e-4295.35Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2G_SOLLC2.700e-4295.35Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_TOBAC2.700e-4295.35Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL2.700e-4295.35Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665116 ID=EY665116; Name=EY665116; organism=Citrus sinensis; type=EST; length=879bp
GGCCGCTCGGTGAAGTGACTGACCCATTGTACCCACGTGGCAGCTTTGAT
CCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAA
GGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCG
TTCATGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCAC
TTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGT
CCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCT
TGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTT
GTGATTATTTATAAAATGCTTCAATTTGATCTAAAATAAAAATATTNATA
AAAAAAATTNACAAAAATTATAATAAAAAGAAAAATTGCGGTCCAAAATT
CAAAATTAACTATCCCTTTTCCTTCTTTCTTTTTTTATAATATAGGGGGG
GGCCCCTTTAAAGGACACAAGTTACGACGCGGGCTGCAAAGATTTCCTTT
TTTTTGGGTCCCCAAATTATATTCCTGGGCCTTTTTTAAAACGCGGGCAT
GGGAAAACCCTGGCGTCCCCTTTTAATTCCTTTGAAAAATTCCCTTTTTC
CCATTGGGTTTAACAAAAAGGCCCCCCGTTTCCCTTCCCAATTTGCCCCC
CTTAATGGAATTGGGCCCCCCTTTACGGCCATATACGCGGGGGGGGGGGG
TGTCCCTCAAGGAACCTACATTGCCAGGCCTACCCCCCCCTTTTGTTTTT
TCCTTTTTCTCGAACCTTTGCGGGTCCCCCGAAACTTAAATGGGGCCCTC
TAGGGTCCATTATGTTTAAGGCCCCCACC
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