EY665115

Overview
NameEY665115
Unique NameEY665115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665115_ssr506 microsatellite EY665115_ssr506:506..517. BLAST: Citrus ESTs to Prunus persica proteins V1
EY665115_ssr149 microsatellite EY665115_ssr149:149..163. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY665115 vs. ExPASy Swiss-Prot
Match: Y1461_ARATH (Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.620e-27
Identity = 58/132 (43.94%), Postives = 79/132 (59.85%), Query Frame = 2 
Query:  413 MGCVFAREFSGKAVKRRREEGSVRVDIKVSXXXXXXXVDITNGNG---GPYHRKESSNSNNEQETTTVRPRGDKKRSSKPNPRLNNPPKHVHGEQVAARWPLLLSAVAGEAISGWTPRRADTFEKLDKIGQG 799
            MGCVF RE +       ++  S +     S         +T  NG       +K++  +N ++E  +   +GD++RS+KPNPRL+NP KH  GEQVAA WP  LS   GEA++GW PR+ADTFEK+DKIGQG
Sbjct:    1 MGCVFGREAATTTTAEAKQAKSSKAS---SGVVVVGESSVTKSNGVIADDVEKKKNEEANGDKERKS--SKGDRRRSTKPNPRLSNPSKHWRGEQVAAGWPSWLSDACGEALNGWVPRKADTFEKIDKIGQG 127

HSP 2 Score: 31.5722 bits (70), Expect = 4.620e-27
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 1 
Query:  796 GSYSNVYKARDSLTGQLWH*KK 861
            G+YSNVYKA+D LTG++   KK
Sbjct:  127 GTYSNVYKAKDMLTGKIVALKK 148
The following BLAST results are available for this feature:
BLAST of EY665115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1461_ARATH4.620e-2743.94Probable serine/threonine-protein kinase At1g54610... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665115 ID=EY665115; Name=EY665115; organism=Citrus sinensis; type=EST; length=866bp
CCACGCGTCCGAAACAGATCCCACAACGCATCAAAATCTCTTTCTTTGAC
ATTCTTTTGCGGGTGATAAATCTTACGTTTAATATTTTTCTAATTCCTCA
TCAAATCAGAAAGCAAGTTTTTATTTTTACTGTTCTCTTTGCTTTTGCCT
TTTCTTTTCTTTTGTTTTTGGGGTTGTGTGTGTTATAGCTCATATATTGG
TTTTGACTGTGCCACAAATTGTGGCCAGCTCCGAATCATTACCTCACTTT
CCTTTTGTCTCAAAAAAGCTAGGTCTTACTCTCCGTCTTCAATTATCCCA
TGCACATTCTCTAATTAATGTTTTTTTTTTTACACCTTATTTGAGTGGAA
AAAATTAAAATTGGTAAAATGTTGTGAGAAATGAGAGATTTTTGTTTTGA
TTTGGTGAAAAAATGGGATGCGTGTTCGCGAGAGAATTTTCGGGGAAGGC
TGTAAAGAGGAGGAGAGAGGAGGGAAGTGTTAGGGTTGACATAAAGGTTT
CAGCCGCGGCGGCGGCGGAGGCCGTTGACATTACAAACGGCAACGGCGGA
CCATATCATCGGAAAGAAAGCAGTAATAGTAACAATGAACAGGAAACGAC
GACTGTACGGCCTAGAGGAGATAAGAAGCGTTCTTCGAAGCCCAATCCGC
GGCTCAACAACCCCCCGAAGCACGTTCACGGTGAACAGGTGGCAGCCAGA
TGGCCCCTCCTGCTCTCTGCCGTTGCTGGGGAAGCTATAAGCGGGTGGAC
CCCGCGCCGTGCCGATACTTTTGAGAAGCTCGATAAGATTGGGCAGGGTC
ATATAGTAATGTGTATAAAGCGAGGGATTCATTGACCGGCCAATTGTGGC
ATTGAAAAAAGTGCGT
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