EY665112

Overview
NameEY665112
Unique NameEY665112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12741 contig Csv1_Contig12741:4..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665112 vs. ExPASy Swiss-Prot
Match: RNF5_CAEEL (RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.637e-29
Identity = 85/254 (33.46%), Postives = 114/254 (44.88%), Query Frame = 2
Query:  137 TSRSAQNPYSNNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKSSTDPRSKSIPGVNIPNRPTGQRPETAPPPEPSHXXXXXXXXXXXXXXXXXXXXXXRFGNFTLSAAFGGLIPPLFNLQVHGFPDPTMYGPAASFPYGFTNSFHG----------------------------GHAHGYPQH-------TGQGQQDYYLKRLLLFIGFWVLLXLI 793
            T   ++ P S++N + E+  FECNIC D A+D +V+LCGHLFCWPCL +WL    N + CPVCK+ I+  K+VP+YGRG  S+DPR K      +P RP GQR E    P P                         FG  T++    GL P +F L       P + G    FP  F  SF G                            GH HG   H       +   Q++ YL  +  +IGF++L  L+
Sbjct:    5 TKAPSEEPTSSSNKD-ESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIYGRGGDSSDPRKK------VPPRPKGQRSE----PPPQSFAGFNWGGDGGMMGGGGPNVHFSFGIGTVN----GLFPLMFML-------PFIQG---IFPLSFVASFFGNGNQGAAAAGGGNGGGNDGNDGTHAHTHGHTHGPRGHGESAAPGSRMAQEEEYLSNIFKYIGFFMLFWLL 233          
BLAST of EY665112 vs. ExPASy Swiss-Prot
Match: RN185_DANRE (RING finger protein 185 OS=Danio rerio GN=rnf185 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.584e-27
Identity = 83/239 (34.73%), Postives = 109/239 (45.61%), Query Frame = 2
Query:  116 ASSFGESTSRSAQNPYSNNNSNSEAGN-------FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPETAPPPEPSHXXXXXXXXXXXXXXXXXXXXXXRFGNFTLSAAFG----GLIPPLFNLQVHGFPDPTMYGPAASFPYGFTNSFHGGHAHGYPQHTGQGQQDYYLKRLLLFIG----FWVLL 784
            A+S   S+S S+    +N  S  E+G        FECNIC D ++D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE    PE                           G F +S   G    G+    FN+   G P P                     A G PQHT     + +L RL LF+     FW+L+
Sbjct:    5 AASESSSSSSSSSAGAANGQSAGESGGGGAQDSTFECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE----PENRGGFQGFGFGD---------------GGFQMSFGIGAFPFGIFATAFNIN-DGRPPPA--------------------APGTPQHT----DEQFLSRLFLFVALLIMFWLLI 193          
BLAST of EY665112 vs. ExPASy Swiss-Prot
Match: RN185_RAT (RING finger protein 185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.294e-26
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 2
Query:  119 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 451
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:    2 ASKGPSASASTENSSAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of EY665112 vs. ExPASy Swiss-Prot
Match: RN185_MOUSE (RING finger protein 185 OS=Mus musculus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.294e-26
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 2
Query:  119 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 451
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:    2 ASKGPSASASTENSNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of EY665112 vs. ExPASy Swiss-Prot
Match: RN185_PONAB (RING finger protein 185 OS=Pongo abelii GN=RNF185 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.882e-26
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 2
Query:  119 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 451
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:    2 ASKGPSASSSPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of EY665112 vs. ExPASy Swiss-Prot
Match: RN185_HUMAN (RING finger protein 185 OS=Homo sapiens GN=RNF185 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.882e-26
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 2
Query:  119 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 451
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:    2 ASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of EY665112 vs. ExPASy Swiss-Prot
Match: RN185_CHICK (RING finger protein 185 OS=Gallus gallus GN=RNF185 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.916e-26
Identity = 56/112 (50.00%), Postives = 74/112 (66.07%), Query Frame = 2
Query:  119 SSFGESTSRSAQNPYSNNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 451
            SS    TS S+ +  + +N+N +   FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:   14 SSSTGGTSGSSSSNGAGDNTNQD-NTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 118          
BLAST of EY665112 vs. ExPASy Swiss-Prot
Match: RNF5_RAT (E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.895e-23
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 2
Query:  167 NNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-KSSTDPRSKSIPGVNIPNRPTGQRP 448
            N      +  FECNIC + A++ +V++CGHL+CWPCL++WL    + +ECPVCKA I  EK+VPLYGRG +   DPR K+      P RP GQRP
Sbjct:   15 NRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP 103          
BLAST of EY665112 vs. ExPASy Swiss-Prot
Match: RNF5_MOUSE (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.895e-23
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 2
Query:  167 NNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-KSSTDPRSKSIPGVNIPNRPTGQRP 448
            N      +  FECNIC + A++ +V++CGHL+CWPCL++WL    + +ECPVCKA I  EK+VPLYGRG +   DPR K+      P RP GQRP
Sbjct:   15 NRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP 103          
BLAST of EY665112 vs. ExPASy Swiss-Prot
Match: RNF5_HUMAN (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.087e-23
Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = 2
Query:  158 PYSNNNSNSEAG-NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-KSSTDPRSKSIPGVNIPNRPTGQRP 448
            P   N     AG  FECNIC + A++ +V++CGHL+CWPCL++WL      +ECPVCKA I  EK+VPLYGRG +   DPR K+      P RP GQRP
Sbjct:   11 PEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP 103          
The following BLAST results are available for this feature:
BLAST of EY665112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RNF5_CAEEL3.637e-2933.46RING finger protein 5 OS=Caenorhabditis elegans GN... [more]
RN185_DANRE7.584e-2734.73RING finger protein 185 OS=Danio rerio GN=rnf185 P... [more]
RN185_RAT1.294e-2648.76RING finger protein 185 OS=Rattus norvegicus GN=Rn... [more]
RN185_MOUSE1.294e-2648.76RING finger protein 185 OS=Mus musculus GN=Rnf185 ... [more]
RN185_PONAB2.882e-2648.76RING finger protein 185 OS=Pongo abelii GN=RNF185 ... [more]
RN185_HUMAN2.882e-2648.76RING finger protein 185 OS=Homo sapiens GN=RNF185 ... [more]
RN185_CHICK4.916e-2650.00RING finger protein 185 OS=Gallus gallus GN=RNF185... [more]
RNF5_RAT3.895e-2350.53E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegi... [more]
RNF5_MOUSE3.895e-2350.53E3 ubiquitin-protein ligase RNF5 OS=Mus musculus G... [more]
RNF5_HUMAN5.087e-2351.52E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-B09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665112 ID=EY665112; Name=EY665112; organism=Citrus sinensis; type=EST; length=911bp
CCACGCGTCCGGTTTCTCCCAGCCTCTGTTTTGACTTTGTGGATCGATCG
ATTCGCAAATCGGTCGGTCGATTTCTTCATTTTGAAGGCATTTGGGTTTT
TGAAATCTAGTGATGGCAAGTAGTTTTGGGGAATCAACAAGCAGGTCGGC
CCAAAACCCTTATTCTAACAACAATAGTAATAGTGAAGCTGGTAACTTCG
AATGCAATATTTGCTTTGACTTAGCTCAAGATCCTATTGTAACTTTGTGC
GGTCATCTTTTCTGCTGGCCCTGCCTTTACAAATGGCTCCACGGTCACTC
AAATTATCGGGAGTGCCCAGTGTGTAAGGCCACAATTGAGGAGGAGAAGC
TCGTGCCCTTGTATGGCAGGGGAAAATCATCAACTGACCCCAGATCAAAA
TCCATCCCTGGTGTTAATATTCCGAACCGTCCTACAGGGCAGAGGCCTGA
AACTGCTCCTCCACCAGAGCCAAGTCATTTTCAGCATCAACATGGATTTG
GCTTTATGGGAGGCTTANGTGGGTTTGCTCCAATGGCCGCAGCAAGATTT
GGGAATTTCACTTTATCTGCAGCTTTTGGTGGCCTCATCCCTCCATTATT
TAATCTTCAAGTGCATGGATTCCCAGATCCTACCATGTATGGTCCAGCTG
CCAGCTTTCCTTATGGGTTTACGAATTCGTTTCATGGTGGTCATGCACAT
GGATATCCACAGCATACGGGTCAGGGGCAACAGGATTATTATCTGAAAAG
ACTGCTTTTGTTTATTGGTTTTTGGGTTCTCCTTGNGCTTATTGGGCAGT
AGACATTCTGCATTTGTCCGGGACTGCTANCANATGTTTAGGCATGTCAA
TTTATATGTCTGTCAATCTGGNTAGTGGGATTCTCCTACCTTTTTCTGTT
TTTTTTTTTTT
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