EY665083

Overview
NameEY665083
Unique NameEY665083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY665083 vs. ExPASy Swiss-Prot
Match: DJC28_MOUSE (DnaJ homolog subfamily C member 28 OS=Mus musculus GN=Dnajc28 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.301e-14
Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = 2 
Query:  293 VVEQRIWHSMEEGQFENLPGKGKPLN-LSTNPHADPAEDTLYRILSKNGCAPEWIELNKEIRNQV----SAWLVALKKAWTSKCNGDSSKWAESSETLKRQLRDINDKVFRYNLIVP-FGRQMFGLKWEKRLARLXD 685
            +VE  I  SM +G F+NL GKGKPL   S   + DP    L RIL  NG  PEWI + KEI++ +     A L++ KK        +  +WA+  E  + ++R +N ++  +NLIVP   RQ      +K + R+ +
Sbjct:  203 LVEDLIQESMAKGDFDNLSGKGKPLKKFSGCSYIDPMTHNLNRILIDNGYQPEWILMQKEIKDTIEQLREALLMSRKKLGNPLSPTEQKQWAQVCEQFQEKIRKLNKRINDFNLIVPILTRQKVHFDAQKEIIRVQE 339
[Close]
BLAST of EY665083 vs. ExPASy Swiss-Prot
Match: DJC28_HUMAN (DnaJ homolog subfamily C member 28 OS=Homo sapiens GN=DNAJC28 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.401e-13
Identity = 49/134 (36.57%), Postives = 66/134 (49.25%), Query Frame = 2 
Query:  293 VVEQRIWHSMEEGQFENLPGKGKPL-NLSTNPHADPAEDTLYRILSKNGCAPEWIELNKEIRNQV----SAWLVALKKAWTSKCNGDSSKWAESSETLKRQLRDINDKVFRYNLIVP-FGRQMFGLKWEKRLAR 676
            +VE  I  SM +G F+NL GKGKPL   S   + DP    L RIL  NG  PEWI   KEI + +     A LV+ KK        +  +W    E  +  +R +N ++  +NLIVP   RQ      +K + R
Sbjct:  203 LVEDLIQESMAKGDFDNLSGKGKPLKKFSDCSYIDPMTHNLNRILIDNGYQPEWILKQKEISDTIEQLREAILVSRKKLGNPMTPTEKKQWNHVCEQFQENIRKLNKRINDFNLIVPILTRQKVHFDAQKEIVR 336
The following BLAST results are available for this feature:
BLAST of EY665083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DJC28_MOUSE2.301e-1435.77DnaJ homolog subfamily C member 28 OS=Mus musculus... [more]
DJC28_HUMAN7.401e-1336.57DnaJ homolog subfamily C member 28 OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665083 ID=EY665083; Name=EY665083; organism=Citrus sinensis; type=EST; length=860bp
TCTATTCTAGGGTTTCTGATCAAAAAATCGCCCAATCGGGACCTGCGTTC
AAGTTCAGTTCACTTGTGCCGGAGAAATGGGCAATTACTTAGTAGACCGG
TTCGTGAGGTCAACGGTCGAAATGTCTTCTAGGTATGGCGTGCCCAGACC
TAGGTGGGCTTCCTCTTCATCGTCAAAGGTGAAAACGACTGATCGTCTAT
CGGCCGTAGCGGACGCTATCAATGATCGGAAACTCCCTCCCGAACTCCGT
GGCCAGCACAGTGCTGTCAGATCAGAAACTGATATAATAGGTGTTGTGGA
GCAGAGAATATGGCATTCAATGGAAGAAGGGCAGTTCGAGAACCTACCAG
GAAAAGGGAAACCGCTAAATCTTAGTACAAATCCTCACGCTGACCCAGCA
GAAGACACTTTGTATAGAATCCTTTCCAAAAATGGATGTGCACCTGAGTG
GATTGAGCTCAATAAAGAAATAAGGAATCAAGTGTCAGCATGGCTTGTGG
CCCTGAAAAAAGCATGGACAAGTAAGTGCAATGGTGATTCTTCGAAATGG
GCGGAGTCTTCTGAGACTTTGAAAAGGCAATTGCGTGATATCAACGACAA
GGTTTTCCGCTATAACCTCATTGTACCTTTTGGTCGCCAGATGTTCGGAC
TGAAGTGGGAGAAAAGATTAGCTCGCTTANAAGATGATTAGTGTCGTGTA
AGGACAGATTCTCTTTTATGGGTTTATTTGAGCCAGACGTTTTAAGTAAC
CACTNCATATAAAATGCTTGTAATTTCATATACATCTTGACACAAATTAT
TNATTTGGAAACTTGAATGTCAAAAAAAAAAAANATATNNAAAAAAAAAA
ANAAAAAGGG
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