EY665054

Overview
NameEY665054
Unique NameEY665054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665054_ssr738 microsatellite EY665054_ssr738:738..749. BLAST: Citrus ESTs to Prunus persica proteins V1
EY665054_ssr818 microsatellite EY665054_ssr818:818..832. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY665054 vs. ExPASy Swiss-Prot
Match: HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.685e-16
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:  175 TLPQYPDMIMAAIEALNEKAGSSKAEISKQMESAYPDLPPAHTTLLAHHLNKMKQSGELVMVKNNYMKPDPNA 393
            +LP YP+MI+  +EALNE  GS+K+ ISK +E+ Y +LP A  T+L  HLNKMK SGEL   +NNYMK DPNA
Sbjct:   11 SLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPDA--TVLGSHLNKMKDSGELSFKQNNYMKADPNA 81
[Close]
BLAST of EY665054 vs. ExPASy Swiss-Prot
Match: HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.662e-11
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:  217 ALNEKAGSSKAEISKQMESAYPDLPPAHTTLLAHHLNKMKQSGELVMVKNNYMKPDPNA 393
            ALNE  GS+K+ ISK +E+ Y +LP    T+L  HLNKMK+SGEL   +NNYMK DPNA
Sbjct:    1 ALNEADGSNKSAISKYIETTYGELPDE--TVLGSHLNKMKESGELAFKQNNYMKADPNA 57
The following BLAST results are available for this feature:
BLAST of EY665054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HMGYA_SOYBN3.685e-1658.90HMG-Y-related protein A OS=Glycine max PE=2 SV=1[more]
HMGYB_SOYBN4.662e-1159.32HMG-Y-related protein B (Fragment) OS=Glycine max ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-E04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665054 ID=EY665054; Name=EY665054; organism=Citrus sinensis; type=EST; length=941bp
GTCCGGNATTCAAAGCCCGACCCACGCGTCCGCCATCTTTTTGCACTCCA
ACAGTCCCCCCTCACTTCCGCTCCCCCACCAACAATGGCTTCCACCGAGT
TTGCGATACAGCAACCAGCTCTGCAAGCACAACAACAGCTACATCAAACG
GCTCAACATCAACAGCTTCCTTCTACTCTCCCGCAATATCCGGATATGAT
CATGGCGGCTATCGAAGCATTGAACGAGAAGGCGGGGTCGTCTAAGGCGG
AGATCTCGAAGCAAATGGAGTCGGCTTACCCGGATCTGCCGCCGGCCCAC
ACTACCTTACTCGCTCACCACTTAAACAAAATGAAGCAGAGCGGAGAGCT
CGTGATGGTAAAAAACAACTACATGAAGCCCGACCCTAACGCCCCGCCTA
AGAGAGGACGTGGCCGGCCGCCGAAGCCGAAGGATCCGTTGCCGCCCGGG
ACAGTGTTGTCGCCGCCGAGACCGCGTGGGCGTCCGCCGAAGCCGAGAGA
TCCATTCGCGCCGCCGGCTGCCTCTAAGAAGAATAGTTCGGGTGGGAGTG
GGAGGCCACGTGGCAGACCTCCTAAGAAGGCTAAGACTGCGCCGGGTCCG
GGTCCGGCTCCCGCCTCAGCCGCGGCTTCTTCTGCTTCGGCTCCAGCTAC
CGGAGCGCCGAGAGGGATGGGCCCGCCACCTAAAGTGAAGCCAGCTGTTG
CGCCGGTAGCTGGTTGACTGAAATTAAGCTGACGAAGAAGAAAGAAAGAG
AAAGGGGAGTTGATTAGNTATTAAATTAGGGTCTTTTTTAGTGTGGTAGT
TTTTACTAATTGATGGGTTTTATTTTATTTTAAATTAATGTAGGNAGTGA
GTGTTGTGGTAATGGAGTTGNAATGTGAGAGGTAATGGGATTGNATTNGA
ATGTAAATTTATGGTCAAAAAAAAAAAAAAAAAAAGGGCGC
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