EY665045

Overview
NameEY665045
Unique NameEY665045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665045 vs. ExPASy Swiss-Prot
Match: RH49_ARATH (DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana GN=RH49 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.371e-25
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  169 LYRWKELEVGKLAMGYGLLQLPSMSEVKIHSLSTKGFVPVKDIKLEDIKYKDKSREKQR 345
            ++ WK LE+GKLAMGYG+L  P +SEVK   +   GF PV+ I  EDIKYK+KSREKQR
Sbjct:  440 IFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKYKNKSREKQR 498          

HSP 2 Score: 55.4546 bits (132), Expect = 7.371e-25
Identity = 23/29 (79.31%), Postives = 28/29 (96.55%), Query Frame = 2
Query:    5 KNRDVMEKGLRAFVSYIRAYKEHHCSYIF 91
            K+R V+EKGL+AFVS++RAYKEHHCSYIF
Sbjct:  413 KDRAVLEKGLQAFVSFVRAYKEHHCSYIF 441          
BLAST of EY665045 vs. ExPASy Swiss-Prot
Match: RH55_ARATH (DEAD-box ATP-dependent RNA helicase 55 OS=Arabidopsis thaliana GN=RH55 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.673e-24
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  169 LYRWKELEVGKLAMGYGLLQLPSMSEVKIHSLSTKGFVPVKDIKLEDIKYKDKSREKQR 345
            ++ WK LE+GKLAMGYG+L  P +SEVK   +   GF PV+ I  EDIK+K+KSREKQR
Sbjct:  347 IFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQR 405          

HSP 2 Score: 54.299 bits (129), Expect = 4.673e-24
Identity = 22/29 (75.86%), Postives = 28/29 (96.55%), Query Frame = 2
Query:    5 KNRDVMEKGLRAFVSYIRAYKEHHCSYIF 91
            K+R+V+EKGL+AFVS++RAYKEH CSYIF
Sbjct:  320 KDREVLEKGLKAFVSFVRAYKEHQCSYIF 348          
BLAST of EY665045 vs. ExPASy Swiss-Prot
Match: RH18_ARATH (DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana GN=RH18 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.727e-19
Identity = 48/99 (48.48%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  169 LYRWKELEVGKLAMGYGLLQLPSMSEVKIHSLSTKGFVPVKDIKLEDIKYKDKSREKQRXXXXXXXXXXXXXXXXXXXXNKASDAATTVMRKKTAKQXT 465
            ++RWK+LE+GKLAMGYGLL LPSMSEVK H LS++GF PV+ +K E+IK+KDK REKQR                     K  DA+ +   KK +++ T
Sbjct:  449 IFRWKDLEIGKLAMGYGLLYLPSMSEVKQHRLSSEGFTPVEGVKFEEIKFKDKYREKQRQQNLQVRKEKRQEEKKEKGKRKRVDASASNDPKKASRKLT 547          

HSP 2 Score: 80.1073 bits (196), Expect = 1.907e-14
Identity = 59/195 (30.26%), Postives = 95/195 (48.72%), Query Frame = 2
Query:    5 KNRDVMEKGLRAFVSYIRAYKEHHCSYIFRSLLPSIHNFSLHFLLFRYNVFYPSYYIGGKNLRSGNWLWVMAYYNFLQCLR*RSILFPPRVSSQLKTSSWRTSSTRINHVRNKGRRICKQRKRHSRKNQNDRNQTRPQMLQLL**GRKQQNXRRAT-QAIEDEDELARDYRLLKKLKKGSIDESEFAKMTGTEEL 586
            K+R VMEKGL+AFVS++RAYKEHHCS+IFR       +  +  L   Y + Y       K  R  +       +  ++ ++   I F  +   + +  + +    +    R + ++   +RKR      ND  +            RK    +R T Q  EDE+ + RDY+L+ K+KKG I E E+ ++TG ++L
Sbjct:  422 KDRAVMEKGLKAFVSFVRAYKEHHCSFIFR-----WKDLEIGKLAMGYGLLYLPSMSEVKQHRLSS-----EGFTPVEGVKFEEIKFKDKYREKQRQQNLQVRKEK----RQEEKKEKGKRKRVDASASNDPKKA----------SRKLTGKQRQTIQTAEDEEVMDRDYKLMIKVKKGLIKEDEYERLTGDDDL 592          
BLAST of EY665045 vs. ExPASy Swiss-Prot
Match: RH18_ORYSJ (DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica GN=Os01g0164500 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.842e-18
Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  169 LYRWKELEVGKLAMGYGLLQLPSMSEVKIHSLSTKGFVPVKDIKLEDIKYKDKSREKQRXXXXXXXXXXXXXXXXXXXXNKASDAATTVMRKKTAKQ 459
            ++ WK+LE+G+L M YGLLQ+PSM EVK HSLS +GF PVKD+ +  IKYKDK+REKQR                     KA +      RKKT KQ
Sbjct:  459 IFSWKDLEIGRLGMEYGLLQIPSMPEVKHHSLSLEGFTPVKDVDVTKIKYKDKAREKQRQKTLKRKAEELALRPEIEKRRKAPEKPEKPKRKKTGKQ 555          

HSP 2 Score: 80.8777 bits (198), Expect = 1.118e-14
Identity = 65/197 (32.99%), Postives = 90/197 (45.69%), Query Frame = 2
Query:    5 KNRDVMEKGLRAFVSYIRAYKEHHCSYIFRSLLPSIHNFSLHFLLFRY----NVFYPSYYIGGKNLRSGNWLWVMAYYNFLQCLR*RSILFPPRVSSQLKTSSWRTSSTRINHVRNKGRRICKQRKRHSRKNQNDRNQTRPQMLQLL**GRKQQNXRRATQAIEDEDELARDYRLLKKLKKGSIDESEFAKMTGTEE 583
            ++R+VMEKGL AFVS++RAYKEHHCSYIF      I    + + L +      V + S  + G        +  + Y +              R   + KT   +     +         I K+RK   +  +  R +T  Q              R+A Q  ED DELA +YRLLKKLK+G IDE E+ K+TG  E
Sbjct:  432 EDRNVMEKGLTAFVSFVRAYKEHHCSYIFSWKDLEIGRLGMEYGLLQIPSMPEVKHHSLSLEGFTPVKDVDVTKIKYKD------------KAREKQRQKTLKRKAEELALR------PEIEKRRKAPEKPEKPKRKKTGKQ--------------RQAVQTKEDMDELANEYRLLKKLKRGVIDEDEYEKLTGFGE 596          
The following BLAST results are available for this feature:
BLAST of EY665045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RH49_ARATH7.371e-2561.02DEAD-box ATP-dependent RNA helicase 49 OS=Arabidop... [more]
RH55_ARATH4.673e-2459.32DEAD-box ATP-dependent RNA helicase 55 OS=Arabidop... [more]
RH18_ARATH5.727e-1948.48DEAD-box ATP-dependent RNA helicase 18 OS=Arabidop... [more]
RH18_ORYSJ2.842e-1848.45DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sa... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-D07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665045 ID=EY665045; Name=EY665045; organism=Citrus sinensis; type=EST; length=902bp
CAAAAAAAACCGTGATGTCATGGAGAAAGGTCTCAGAGCATTTGTTTCTT
ATATACGTGCATATAAAGAGCATCACTGCTCGTATATCTTCAGGTCACTA
CTGCCTTCTATCCATAATTTCTCTCTGCATTTTTTATTGTTTCGTTATAA
TGTTTTTTATCCATCATATTATATAGGTGGAAAGAACTTGAGGTCGGGAA
ATTGGCTATGGGTTATGGCTTACTACAACTTCCTTCAATGTCTGAGGTAA
AGATCCATTCTCTTTCCACCAAGGGTTTCGTCCCAGTTAAAGACATCAAG
TTGGAGGACATCAAGTACAAGGATAAATCACGTGAGAAACAAAGGAAGAA
GAATTTGCAAGCAAAGAAAGAGGCACAGCAGAAAGAACCAAAACGACAGA
AACCAAACAAGGCCTCAGATGCTGCAACTACTGTGATGAGGAAGAAAACA
GCAAAACAGNAGACGTGCTACCCAGGCAATCGAAGACGAAGATGAGCTGG
CCCGGGATTACCGCCTATTAAAAAAGCTAAAAAAGGGTAGTATAGATGAA
AGTGAATTTGCAAAGATGACGGGGACAGAAGAGTTGCTATAAGTGCATCA
TGCANGTCATGATTCTGCAAGTTTTGATGTTGATTGGGTGTTGTCAGCCC
TCAATGAGAAGAAATCTTAACCTGCCGTCTGGTTGTGCCCCAACCCATGT
AAAGCTTGTTTTGCCCTCCTCTAATGATATGCATTATTTGGTGTTCTGTC
ACACCTCAGGNAAATTTCTTGCCCCATTGGCACTTAATACAAAATATTTA
AATAAATTTGTAGATTAAAAGACTGTCTCTCACTGGAGNTCCCTGTGCAT
NNTCTAATATCAGNNATNCTGNATTTGATCCTGTATATNNCAGTGAATAA
AT
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