EY665041

Overview
NameEY665041
Unique NameEY665041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8549 contig Csv1_Contig8549:144..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665041 vs. ExPASy Swiss-Prot
Match: ARI1_ARATH (Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana GN=ARI1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.375e-24
Identity = 55/123 (44.72%), Postives = 73/123 (59.35%), Query Frame = 3
Query:  450 CSQYLDDDEVDIDDNGYGFEAPATENMARASASSMVIPKESLLAAQMGDLLRVMDLLSLKEKHARTLLXHYRWDVXKVFAVLVEDGK**LFAQAGGTVVEDDXXXXXXXXXXTFCCNICWDDV 818
            C    D D +D  DN    E    + ++   +++ VI +ESLLAAQ  DLLRVM+LLS+KE HARTLL HY+WDV K+FAV VE GK  LF+ AG TV +               C++C +D+
Sbjct:   12 CYYSSDQDSLDGIDN----EESELQPLSSKRSNTQVITQESLLAAQREDLLRVMELLSIKEHHARTLLIHYQWDVEKLFAVFVEKGKDSLFSGAGVTVFDYQYGNSSFPQSSQMSCDVCMEDL 130          

HSP 2 Score: 35.039 bits (79), Expect = 6.375e-24
Identity = 13/18 (72.22%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  833 TTMDWGHXFCNICWT*HF 886
            T MD GH FCN CWT HF
Sbjct:  136 TRMDCGHCFCNNCWTEHF 153          
BLAST of EY665041 vs. ExPASy Swiss-Prot
Match: ARI2_ARATH (Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana GN=ARI2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.239e-23
Identity = 57/121 (47.11%), Postives = 74/121 (61.16%), Query Frame = 3
Query:  459 YLDDDEVDIDDNGYGFEAPATENMARASASSMVIPKESLLAAQMGDLLRVMDLLSLKEKHARTLLXHYRWDVXKVFAVLVEDGK**LFAQAGGTVVEDDXXXXXXXXXXT-FCCNICWDDV 818
            Y   D+  +  NG   +   +  ++  S +  VI KESLLAAQ  DL RVM+LLS+KE HARTLL HYRWDV K+FAVLVE GK  LF+ AG T++E+           +   C+IC +DV
Sbjct:   13 YYSSDQESL--NGIDNDESVSIPVSSRSNTVKVITKESLLAAQREDLRRVMELLSVKEHHARTLLIHYRWDVEKLFAVLVEKGKDSLFSGAGVTLLENQSCDSSVSGSSSMMSCDICVEDV 131          

HSP 2 Score: 35.039 bits (79), Expect = 5.239e-23
Identity = 13/18 (72.22%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  833 TTMDWGHXFCNICWT*HF 886
            T MD GH FCN CWT HF
Sbjct:  137 TRMDCGHSFCNNCWTGHF 154          
BLAST of EY665041 vs. ExPASy Swiss-Prot
Match: ARI3_ARATH (Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana GN=ARI3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.277e-18
Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = 3
Query:  465 DDDEVDIDDNGYGFEAPATENMARASASSMVIPKESLLAAQMGDLLRVMDLLSLKEKHARTLLXHYRWDVXKVFAVLVEDGK**LFAQAGGTVVEDDXXXXXXXXXXTFCCNICWDDVSPQEVL 836
            ++DE   +D+ Y       + +    ++S VI KESL+AAQ   L+RVM+LLS+KE  ARTLL +Y+W+V K+F+V  + GK  +F+ AG TV              T  C++C +D  P  V+
Sbjct:   15 EEDENYSEDDNYSEAEVDLQPVTSTKSTSQVIKKESLVAAQKEILVRVMELLSVKENQARTLLIYYQWNVEKLFSVFADQGKDRMFSCAGLTV----FVPSLVTSKKTMKCDVCMEDDLPSNVM 134          

HSP 2 Score: 31.5722 bits (70), Expect = 3.277e-18
Identity = 12/22 (54.55%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  821 SSRSTTMDWGHXFCNICWT*HF 886
            S+  T M+ GH FCN CW  HF
Sbjct:  131 SNVMTRMECGHRFCNDCWIGHF 152          
BLAST of EY665041 vs. ExPASy Swiss-Prot
Match: ARI4_ARATH (Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana GN=ARI4 PE=5 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.164e-14
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  546 SSMVIPKESLLAAQMGDLLRVMDLLSLKEKHARTLLXHYRWDVXKVFAVLVEDGK**LFAQAGGTVVEDDXXXXXXXXXXTFCCNICWDD 815
            +S VI KE+L+AAQ   L++VM+ LS+ E  ARTLL  Y+W+V K+F+V  + GK  LF++AG TV +            T  C+IC ++
Sbjct:   42 TSQVITKEALVAAQKEVLVKVMEFLSVTENQARTLLIQYQWNVDKLFSVYTDQGKDVLFSRAGLTVFDPS------LTKKTMKCDICMEE 125          

HSP 2 Score: 31.187 bits (69), Expect = 3.164e-14
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  833 TTMDWGHXFCNICWT*HF 886
            T M+ GH FCN CW  HF
Sbjct:  133 TRMECGHRFCNDCWKEHF 150          
The following BLAST results are available for this feature:
BLAST of EY665041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ARI1_ARATH6.375e-2444.72Probable E3 ubiquitin-protein ligase ARI1 OS=Arabi... [more]
ARI2_ARATH5.239e-2347.11Probable E3 ubiquitin-protein ligase ARI2 OS=Arabi... [more]
ARI3_ARATH3.277e-1837.90Probable E3 ubiquitin-protein ligase ARI3 OS=Arabi... [more]
ARI4_ARATH3.164e-1442.22Putative E3 ubiquitin-protein ligase ARI4 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-D03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665041 ID=EY665041; Name=EY665041; organism=Citrus sinensis; type=EST; length=891bp
ATCAATAGAAGCTGAATATGAGCATTTCTACATAAGCACATACAGTACAT
CTCAGACAGCAAGCAAACAGTATTAATCCTAGTCGCTGCTATCATTTTAT
TCAATATTTTAATGCAAGAGCCATGTCACTTTATTGGTGATATTAATTAT
TATTGATTATAATTTATGTGACATGGTTTTTCAAGGACGGTTTAGAATTA
TATTGGCATCACCAGGTTTTTCTCCTTGAGAGAAGGCGGCACTGGGAACG
AGTTGAAGGTCCAATTTATAACCTCATGGCTTTCTAAAAAGTCCCCCGTA
GCTGCTGTGAATCCAACATAGACGGGCGTTGGAATTATATCTGACAGGTT
AATGGGTTTTTCAATCACCTTCACAAGTGTTTCCCCCGAATATGCCGCAT
AAATAGAGAGTTGTCCAAAGTCTGGATTGTAATAAATTCGAACCTGGATT
GCTCCCAGTATCTTGATGACGATGAAGTCGATATTGATGATAATGGATAC
GGCTTTGAAGCCCCTGCGACTGAGAACATGGCCAGAGCTAGTGCGTCCAG
TATGGTAATACCAAAAGAATCACTTTTGGCTGCACAGATGGGGGACTTGC
TAAGAGTAATGGACTTGCTATCACTGAAGGAAAAACATGCACGAACCTTA
CTCATNCATTATCGTTGGGACGTANAAAAAGTGTTTGCAGTGCTTGTAGA
GGATGGAAAATGATAATTATTTGCTCAAGCAGGGGGTACAGTTGTAGAGG
ATGATNCATCAAGTTCCTTATCCCCAGTGTCATCCACTTTTTGTTGCAAT
ATTTGCTGGGATGACGTGTCTCCTCAAGAAGTACTACCATGGACTGGGGT
CATTGNTTTTGCAACATTTGTTGGACTTGACATTTTATCGG
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