EY665035

Overview
NameEY665035
Unique NameEY665035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9966 contig Csv1_Contig9966:392..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665035 vs. ExPASy Swiss-Prot
Match: PHF1_ARATH (SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2)

HSP 1 Score: 353.214 bits (905), Expect = 1.116e-96
Identity = 171/271 (63.10%), Postives = 203/271 (74.91%), Query Frame = 1
Query:    1 CLFFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLXTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYXXXXXXXXXXXXXXYIFFENXDSFWNFPVARNQHGRPKIESILRDPQS--SDDQNMWN 807
            C+ FS DGS+ A GGVDG LRIM WP+L +ILDEPKAHKS+ DMDFSLDSEFLATTSTDGSARIWK EDG   + L R+ DE IELCRFSKDGTKPFLFC  QRGD  ++ VYDISTW K+G K+L RK AS +++SLDGKY+A+G KDGD+ V +VK MEI H+SKRLHL  SIA +EFCP++RV+LT S EWG M+TKLTVP +WKEWQIY              Y+FFEN DSFW  P+ ++Q  RPKI S+     S  S+D + WN
Sbjct:  127 CMAFSFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARIWKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYDISTWKKLGFKKLSRKTASTMAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEFCPSERVMLTTSSEWGEMVTKLTVPKEWKEWQIYALLFCLFMASVIAAYVFFENSDSFWKLPMGKDQK-RPKI-SLFGGSSSTPSEDHSRWN 395          
BLAST of EY665035 vs. ExPASy Swiss-Prot
Match: STLP2_ARATH (SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4)

HSP 1 Score: 102.064 bits (253), Expect = 4.481e-21
Identity = 63/208 (30.29%), Postives = 101/208 (48.56%), Query Frame = 1
Query:    4 LFFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP---FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLXTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 618
            L F+ +GS  AAG  DG LR+  WPS+  +L+E +AH SV  + FS   +FL +       R+W      A   L++  DE    CRFS D       ++    +RG   +    D   W +   K + +   S  ++S DGK LA+G+ +GD+ +++  +M+     K+ HL    AL  F P  R +++ S +  A +T +    D
Sbjct:  159 LAFNPEGSVLAAGAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSLG-GPVCRVWDVNASAAVASLSKEKDEMFASCRFSVDSAGNEVLYIAANTERGGSIITC--DTKLWKRKWSKPIKKNSISAFNVSADGKLLAIGTLEGDVLILESTRMQTIQVVKKAHLGLVTALT-FSPDSRGLVSVSFDSRARLTMIEQKGD 362          
The following BLAST results are available for this feature:
BLAST of EY665035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PHF1_ARATH1.116e-9663.10SEC12-like protein 1 OS=Arabidopsis thaliana GN=PH... [more]
STLP2_ARATH4.481e-2130.29SEC12-like protein 2 OS=Arabidopsis thaliana GN=ST... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665035 ID=EY665035; Name=EY665035; organism=Citrus sinensis; type=EST; length=878bp
TGCCTATTCTTCAGTGTGGATGGATCTAGATTCGCTGCTGGTGGAGTGGA
TGGACATCTCAGAATAATGCATTGGCCAAGCCTGCGCATCATTTTAGATG
AACCAAAAGCACACAAGTCTGTGTTGGATATGGACTTTAGCCTAGATTCA
GAGTTTTTGGCTACAACTTCTACTGATGGTTCTGCTAGAATATGGAAAAC
AGAAGATGGTGTTGCTTGGACTTTCTTAACTCGCAACTCGGATGAGAAGA
TTGAGTTATGCAGATTCTCCAAGGATGGGACAAAACCATTTTTGTTTTGC
ACAGTTCAAAGAGGTGATAAAGCTCTCCTTGCGGTTTATGATATCAGTAC
ATGGAACAAAATTGGCCATAAGAGGCTGCTTAGAAAGCCTGCATCTGTAT
TGTCTATCAGCTTGGATGGGAAGTATCTTGCTATGGGAAGCAAAGATGGG
GACATCTGTGTTGTCGATGTGAAAAAAATGGAAATCAATCATTGGAGTAA
GAGGCTACACCTGNGTACCTCCATTGCATTAGTTGAGTTCTGTCCCACCC
AAAGGGTGGTGCTTACCGCTTCTAAAGAGTGGGGAGCTATGATCACCAAG
CTAACTGTTCCGGCAGATTGGAAAGAGTGGCAGATTTACTCGTTGCTTTT
AGCTCTATTTCTGGCATCGGCTGTTGTATTTTACATTTTCTTCGAGAACT
NCGATTCATTTTGGAATTTTCCTGTTGCAAGAAATCAACATGGGAGACCA
AAGATTGAATCCATTCTAAGAGATCCGCAGTCGTCGGATGATCAAAATAT
GTGGAATGCATTTGATCCATTGGATATGTGATCAAACTATGTGGAATGCA
TTTGAACCATTGGGATACTGAGCACTTG
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