EY665033

Overview
NameEY665033
Unique NameEY665033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665033_ssr492 microsatellite EY665033_ssr492:492..509. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY665033 vs. ExPASy Swiss-Prot
Match: KINB1_ARATH (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.122e-35
Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:   40 VQSCVPEILDSVAEFEAPASPESSYSQALPSEEDYAKEPLTVPSQLHLTLLGTENSDEASSSKPKHVVLNHVFVDDGWKSKSVVALGLTHRFQSKYVTVVLYKPRKR 360
            V + VPE  +S+ EFEAP SP+ SY Q LP+ EDYAKEPL VP QLHLTLLGT   + A ++KP+HVVLNHVF++ GW  +S+VALGLTHRF+SKY+TVVLYKP  R
Sbjct:  178 VHNFVPENPESIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLGT-TEETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283
[Close]
BLAST of EY665033 vs. ExPASy Swiss-Prot
Match: KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.075e-22
Identity = 57/110 (51.82%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:   40 VQSCVPEILDSVAEFEAPASPESSYSQALPSEEDYAKEPLTVPSQLHLTLLG--TENSDEASS-SKPKHVVLNHVFVDDGWKSKSVVALGLTHRFQSKYVTVVLYKPRKR 360
            +Q  VPE + S++ FE P SPE+SYS  L   EDY+KEP  VP  L +TLL     N D  S   +P+HV+LNH+++  G    SVVALG THRF +KYVTVVLYK  +R
Sbjct:  180 LQDYVPEDIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289
The following BLAST results are available for this feature:
BLAST of EY665033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KINB1_ARATH8.122e-3565.42SNF1-related protein kinase regulatory subunit bet... [more]
KINB2_ARATH2.075e-2251.82SNF1-related protein kinase regulatory subunit bet... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-C07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665033 ID=EY665033; Name=EY665033; organism=Citrus sinensis; type=EST; length=528bp
TGTTGTTTACTTATGTGATATTAATAAAATAACTATGTTGTGCAGAGTTG
CGTGCCAGAAATTCTTGATAGTGTAGCTGAGTTTGAAGCTCCCGCATCTC
CAGAGTCAAGTTACAGTCAGGCTCTTCCATCAGAAGAAGATTATGCAAAG
GAGCCATTAACAGTTCCATCCCAGCTGCACCTGACTCTACTCGGTACAGA
GAATTCAGATGAGGCATCTTCTTCAAAGCCAAAACATGTTGTGCTTAATC
ACGTTTTCGTGGATGATGGATGGAAATCCAAGTCTGTGGTTGCCCTTGGA
TTAACCCACAGGTTTCAGTCCAAGTATGTCACTGTTGTTCTATATAAGCC
GCGCAAAAGGTAGCACTCGACTTTCCATGATCCACCCTGTAAAGGAAAGA
TTATCAACTTTCACAGATTTGAGGAGTGTTTATAATATAGCACTACATTT
AACGTTTGCCCGACATTGTTGGTTTCTTTAGTATTTTCTTTTTCTTCTTC
TTCTTCTTCAAAAAAAAAAAAAAAAAAA
back to top