EY665032

Overview
NameEY665032
Unique NameEY665032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665032_ssr561 microsatellite EY665032_ssr561:561..575. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:34..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665032 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.408e-47
Identity = 111/193 (57.51%), Postives = 132/193 (68.39%), Query Frame = -1
Query:  162 SMLQSPVAARVTGIX-RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXQXXXXXXXXXXXXXP------RMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 713
            S  QS ++  +T I  RS  NQ +++   Y+P+LRRNV+L VR  A                         P      +MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:    4 SSCQSIMSNSMTNISSRSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of EY665032 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.118e-36
Identity = 70/108 (64.81%), Postives = 95/108 (87.96%), Query Frame = -1
Query:  162 EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 485
            ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:   90 DLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of EY665032 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.413e-31
Identity = 69/110 (62.73%), Postives = 84/110 (76.36%), Query Frame = -1
Query:  162 EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 485
            +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  120 DALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of EY665032 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.031e-29
Identity = 65/116 (56.03%), Postives = 81/116 (69.83%), Query Frame = -1
Query:  162 RMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 506
            + ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:   55 KASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of EY665032 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.571e-29
Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = -1
Query:  174 RMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 506
            + ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   50 KASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of EY665032 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.193e-16
Identity = 55/107 (51.40%), Postives = 66/107 (61.68%), Query Frame = -1
Query:  174 SEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVKG 488
            +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   68 TEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of EY665032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.408e-4757.51Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.118e-3664.81Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU2.413e-3162.73High molecular mass early light-inducible protein ... [more]
ELI9_HORVU5.031e-2956.03Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU6.571e-2957.14Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA2.193e-1651.40Carotene biosynthesis-related protein CBR, chlorop... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665032 ID=EY665032; Name=EY665032; organism=Citrus sinensis; type=EST; length=800bp
CCACGCGTCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTACTAGAAAATGG
GGGTTGAATTACAGAATGGCATGAGAAATAGAGATTTAATTACAGTAGGA
TCTCATACATTAATTAGTTAAAAAAAATACAGATCTACAGATCTAAACAA
AATTAAGCTTAAACAAGGGTGCCACCCTTAACAAACTCGGTGAAAGCCAA
AGCAACAAGGCCCAGCATAGCAAACCTCCCATTCCACAACTCAGCATCCG
AAGTCATGAACCCATCCGATTTAGACTCCACGCTGACACCTTTAAACAAA
GGAACCAGGGACGCAACCGTGAGCAAAACACTGGTCCCCAAGAACCAGGC
AACCCCACCGTCTGATAACTGGGCAAACACATCCTGACCCTTGGATATCT
CCACCCCCAATGCAGCCACGAACCCAATCATCGCAAGCCTCCCGTTTATC
CTCTCCGGTGCCGGCCCGCTGAACGCGAACACCTCAGAGAACCCCGTGCT
CATCCGCGGCTTCTTTGGTGGCTGAGGCTCANCTTTCGGTATGGTTGGTT
GATCATCTTTCTGCTGCTGCTGCTGCTCATCCTCTGCCGTGCAGCGCACG
GATAAGTTGACATTTCTACGCAGACTAGGCAAGTACTTGACGGAGGAAAG
TTGGTTTGCCCCGGATCTNCTGATACCAGTCACACGAGCTGCTACAGGAC
TTTGCAGCATAGATTGAGTAGCAAGTGATGCGGCCATTTTTAATTTATGA
GTAGAAACAGAACAAAGTTATTCGGGAATTGGTGCTCAAGTCGGCGTCTG
back to top