EY665027

Overview
NameEY665027
Unique NameEY665027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8139 contig Csv1_Contig8139:811..1593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.006e-67
Identity = 120/159 (75.47%), Postives = 138/159 (86.79%), Query Frame = 1
Query:   28 ILYPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 504
            +LYP+KARGVA FN+PLAHMI AGADF+L+PSRFEPCGLIQLHAMRYGT+PI   TGGLVDTV EGFTGF MG+F+V+C  VDP DV  ++TTV RALA YG+ A  EM++N MAQDLSWKGPAK WE+ LL+L V+GSEPG+DGEEIAPLAKENVATP
Sbjct:  450 VLYPDKARGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLHAMRYGTIPICASTGGLVDTVTEGFTGFHMGAFNVECATVDPADVQKIATTVERALAAYGSVAYKEMIQNCMAQDLSWKGPAKNWEKMLLSLGVSGSEPGVDGEEIAPLAKENVATP 608          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 8.430e-66
Identity = 119/159 (74.84%), Postives = 136/159 (85.53%), Query Frame = 1
Query:   28 ILYPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 504
            +LYP+KARGVA FN+PLAHMI AGADF+L+PSRFEPCGLIQLHAMRYGTVPIV  TGGLVDTV+EG+TGFQMG+  V+C+ +D  DVAA+  TV RAL TY T AL EM+ N MAQDLSWKGPA+ WE+ LL+LEV GSEPG +GEEIAPLAKENV TP
Sbjct:  450 VLYPDKARGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKEGYTGFQMGALHVECDKIDSADVAAIVKTVARALGTYATAALREMILNCMAQDLSWKGPARMWEKMLLDLEVTGSEPGTEGEEIAPLAKENVPTP 608          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.438e-65
Identity = 117/159 (73.58%), Postives = 136/159 (85.53%), Query Frame = 1
Query:   28 ILYPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 504
            +LYP KA+GVA FN+PLAHMI AGADF+L+PSRFEPCGLIQLHAMRYGTVPI   TGGLVDTV+EG+TGF MG+F+V+C+ VDP DV  + TTV RALA YGT A AEM+KN M+++LSWK PAKKWE  LL L  +GSEPG++GEEIAPLAKENVATP
Sbjct:  449 VLYPNKAKGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLHAMRYGTVPICASTGGLVDTVKEGYTGFHMGAFNVECDVVDPADVLKIVTTVARALAVYGTLAFAEMIKNCMSEELSWKEPAKKWETLLLGLGASGSEPGVEGEEIAPLAKENVATP 607          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.438e-65
Identity = 120/159 (75.47%), Postives = 136/159 (85.53%), Query Frame = 1
Query:   28 ILYPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 504
            ++YP+KARGVA FN+PLAHMI AGADF+LIPSRFEPCGLIQLHAMRYGT  I   TGGLVDTV+EG+TGF MG+F+VDCE VDP DV  V TTV RALA YGT A  EM+KN M+Q+LSWKGPAK WE  LL+L VAGSEPG++G+EIAPLAKENVATP
Sbjct:  450 VMYPDKARGVAKFNVPLAHMITAGADFMLIPSRFEPCGLIQLHAMRYGTPCICASTGGLVDTVKEGYTGFHMGAFNVDCETVDPEDVLKVITTVGRALAMYGTLAFTEMIKNCMSQELSWKGPAKNWETVLLSLGVAGSEPGVEGDEIAPLAKENVATP 608          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.645e-61
Identity = 113/157 (71.97%), Postives = 130/157 (82.80%), Query Frame = 1
Query:   34 YPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 504
            +P KA GVA FN+PLAHMI AGADFI++PSRFEPCGLIQLHAMRYGTVPIV  TGGLVDTV++G+TGF +G F+V CE VDP DV A +  V RA+A YGT A+ EM+KN M QD SWKGPA+ WE+ LL+L VAGSE G +GEEIAPLAKENVATP
Sbjct:  454 FPGKAVGVAKFNVPLAHMITAGADFIIVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKDGYTGFHIGRFNVKCEVVDPDDVIATAKAVTRAVAVYGTSAMQEMVKNCMDQDFSWKGPARLWEKVLLSLNVAGSEAGTEGEEIAPLAKENVATP 610          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.292e-60
Identity = 112/159 (70.44%), Postives = 127/159 (79.87%), Query Frame = 1
Query:   28 ILYPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 504
            + YP+ ARG+A FN+PLAHM+ AGADFI+IPSRFEPCGLIQL  M YG VPI   TGGLVDTV EG TGF MGSF+V+ E VDP DVAAV + V RAL  Y T     M++N MAQDLSWKGPAKKWEE LL+L V GS+PGI+GEEIAPLAK+NVATP
Sbjct:  407 VKYPQNARGIAKFNVPLAHMMFAGADFIIIPSRFEPCGLIQLQGMSYGVVPICSSTGGLVDTVREGVTGFHMGSFNVEFETVDPTDVAAVGSNVTRALKQYRTPVFHAMVQNCMAQDLSWKGPAKKWEEALLSLGVEGSQPGIEGEEIAPLAKQNVATP 565          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.430e-59
Identity = 111/157 (70.70%), Postives = 128/157 (81.53%), Query Frame = 1
Query:   34 YPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 504
            YP KA G+  FN PLAH IIAGADFI+IPSRFEPCGL+QLHAM YGTVPIV  TGGLVDTV+EG+TGF  G F V+CE VDP DV  ++ TV+RAL TYGTQA+ +++ N MAQ+ SWK PAK WE+ LLNLEV G+  GIDG+EIAPLAKENVATP
Sbjct:  447 YPGKAIGITKFNSPLAHKIIAGADFIVIPSRFEPCGLVQLHAMPYGTVPIVSSTGGLVDTVKEGYTGFHAGPFDVECEDVDPDDVDKLAATVKRALKTYGTQAMKQIILNCMAQNFSWKKPAKLWEKALLNLEVTGNVAGIDGDEIAPLAKENVATP 603          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.544e-54
Identity = 104/157 (66.24%), Postives = 118/157 (75.16%), Query Frame = 1
Query:   34 YPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 504
            YP K R V  FN PLAH+I+AGAD + +PSRFEPCGLIQL  MRYGT      TGGLVDTV EG TGF MG  SVDC+ V+P DV  V+TT++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGSEPG++GEEIAPLAKENVA P
Sbjct:  450 YPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVQKVATTLKRAIKIVGTPAYNEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSEPGVEGEEIAPLAKENVAAP 606          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.798e-53
Identity = 102/157 (64.97%), Postives = 115/157 (73.25%), Query Frame = 1
Query:   34 YPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 504
            YP+K R V  FN  LAH I+AGAD + + SRFEPCGLIQL  MRYGT      TGGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM+KN M QDLSWKGPAK WE  LL+L VAG EPGI+GEEIAPLAKENVA P
Sbjct:  452 YPDKVRAVVKFNAALAHHIMAGADLLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPADVKKVATTLKRAIKVVGTPAYEEMVKNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGIEGEEIAPLAKENVAAP 608          
BLAST of EY665027 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.798e-53
Identity = 102/157 (64.97%), Postives = 116/157 (73.89%), Query Frame = 1
Query:   34 YPEKARGVATFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVVFTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 504
            YP K R V  FN PLAH+I+AGAD + +PSRFEPCGLIQL  MRYGT      TGGLVDTV EG TGF MG  SVDC+ V+P DV  V+ T++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGS PGI+G+EIAPLAKENVA P
Sbjct:  453 YPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 609          
The following BLAST results are available for this feature:
BLAST of EY665027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
SSG1_ANTMA2.006e-6775.47Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MANES8.430e-6674.84Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU1.438e-6573.58Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_IPOBA1.438e-6575.47Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH1.645e-6171.97Probable granule-bound starch synthase 1, chloropl... [more]
SSG1B_HORVU5.292e-6070.44Granule-bound starch synthase 1b, chloroplastic/am... [more]
SSG1_PEA3.430e-5970.70Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSA2.544e-5466.24Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI4.798e-5364.97Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSJ4.798e-5364.97Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665027 ID=EY665027; Name=EY665027; organism=Citrus sinensis; type=EST; length=782bp
ATTCCACAGGCTCGACCCACGCGTCCGATACTGTATCCTGAGAAAGCCAG
AGGAGTAGCGACCTTCAATATTCCTCTGGCGCATATGATAATAGCAGGAG
CTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGTCTCATTCAA
TTACATGCCATGCGTTATGGAACCGTACCTATCGTGGTTTTCACTGGTGG
TTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGATGGGAAGCT
TCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCTGCAGTGTCC
ACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGCTTTGGCTGA
AATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAGGACCAGCTA
AGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGTAGTGAACCT
GGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAATGTGGCCAC
TCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGACCGCAAACA
TGTTCCTGTAATTCTCCACAACCCAAGATATTACTTANGAAATAACATAG
GTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTTTGGAGTTGA
GACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTGTTTTACAGT
TTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAATGAAAAAGT
CAACTGAACAAGTTTATAGATTCNNNNNNAAA
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