EY665025

Overview
NameEY665025
Unique NameEY665025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2086 contig Csv1_Contig2086:164..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665025 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.468e-59
Identity = 113/157 (71.97%), Postives = 133/157 (84.71%), Query Frame = 2
Query:   41 ASSSLFTPSTITVRKHQISPSTISFQGLRPLNTRAKTS-LPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGKFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 508
            ++S+L +P+T +      +P++ISF GLRPL     +S LPKL+T+ +++S   ++AELS  +VISLSTGLSLFLG+FVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP FFG
Sbjct:    4 SASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160          
BLAST of EY665025 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.515e-48
Identity = 108/160 (67.50%), Postives = 120/160 (75.00%), Query Frame = 2
Query:   32 TMAASSSLFTPSTITVRKHQISPSTISFQGLRPL--NTRAKTSLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGKFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 505
            T+ A  S   P      +HQ      SF GLRPL  N  +  S   L+ S+ R S    +AELS  LVISLSTGLSLFLG+FVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP FF
Sbjct:   11 TLLAPCSSKQPQPQQQHQHQ-QLKCKSFSGLRPLKLNISSNNSSSSLSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167          
BLAST of EY665025 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.622e-42
Identity = 91/139 (65.47%), Postives = 108/139 (77.70%), Query Frame = 2
Query:   92 ISPSTISFQGLRPLNTRAKTSLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGKFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 508
            +SP  ++   L P + RA  S   ++  A+R+     +A L   +VISLSTGLSL +G+FVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP FFG
Sbjct:    9 LSPPAVAGLRLAP-SPRAAASFRGVSPPARRSV--AARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 143          
BLAST of EY665025 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.693e-21
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  215 STPLVISLSTGLSLFLGKFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 493
            +T  +IS ST   L LG+FVF  FQR  V++ GLPEQNGV          + + S+LK+NDP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct:   17 NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109          
BLAST of EY665025 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.091e-12
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 2
Query:  209 ELSTPLVISLSTGLSLFLGKFVFFNFQRENVAKQGLPEQ 325
            EL+  LVISLSTGLSLFLG+FVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
BLAST of EY665025 vs. ExPASy Swiss-Prot
Match: PSAG_CHLRE (Photosystem I reaction center subunit V, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAG PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.526e-11
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  203 KAELSTPLVISLSTGLSLFLGKFVFFNFQRE--NVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSS 481
            KA L   +VIS ST   L +G+FVF  +QR   N      P+  G T+F+  D++     ++  +NDP GFNI+DV  WG++GH V + +LA +S
Sbjct:   29 KAALDPQIVISGSTAAFLAIGRFVFLGYQRREANFDSTVGPKTTGATYFD--DLQKNS--TIFATNDPAGFNIIDVAGWGALGHAVGFAVLAINS 119          
The following BLAST results are available for this feature:
BLAST of EY665025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSAG_ARATH9.468e-5971.97Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL1.515e-4867.50Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU1.622e-4265.47Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU2.693e-2151.61Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA5.091e-1289.74Photosystem I reaction center subunit V (Fragment)... [more]
PSAG_CHLRE2.526e-1140.00Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-B08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665025 ID=EY665025; Name=EY665025; organism=Citrus sinensis; type=EST; length=651bp
CAAAATTTTAGGAAAAAGAGGGTGAAAAAAGACCATGGCAGCCTCATCCT
CCTTGTTCACACCCTCCACCATCACCGTCCGAAAACACCAAATTTCACCC
TCCACCATCTCATTCCAAGGCCTAAGACCCCTCAACACCAGGGCCAAAAC
CTCCCTCCCCAAGCTCGCCACCTCCGCCAAAAGAAACAGCTTCGGCGGCA
TTAAAGCTGAGCTGAGCACACCACTTGTCATCAGCCTCAGCACTGGCCTC
TCCTTGTTCTTGGGCAAGTTCGTCTTCTTCAACTTCCAAAGAGAGAACGT
GGCCAAACAAGGCTTGCCCGAGCAGAATGGAGTCACCCACTTTGAAGCCG
GTGATGTTCGTGCCAAGGAATATGTTAGCCTCCTCAAATCCAACGACCCA
GTTGGCTTTAACATTGTTGATGTTCTTGCTTGGGGTTCCATTGGCCATAT
TGTCGCTTACTACATCTTGGCCACCTCCAGCAACGGCTATGATCCCAAGT
TCTTTGGTTGATTTTGTTATTAGTACTGTCTCTCTTTGTCTCTTTTAGTT
TCTTAATTTCTCAAGTGTTGCGCTGTGTATAGTTAAATAAATTTCCTAGC
ATTTAATGGATACAACTACCGGAACGCCAAAAGGGAGGGGCCGGCCACCT
A
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