EY664994

Overview
NameEY664994
Unique NameEY664994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664994_ssr747 microsatellite EY664994_ssr747:747..758. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6135 contig Csv1_Contig6135:22..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY664994 vs. ExPASy Swiss-Prot
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.011e-18
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:  196 RDTLKLGVCADLLNDLVHLVVGTPPVTPCCALLKGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXYCGNGVPSGFQC 438
            RD LKLGVCAD+LN + ++V+G+PP  PCC+LL+GL +LEAAVCLCTAIKA                   CG  VP+GF+C
Sbjct:   56 RDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136
The following BLAST results are available for this feature:
BLAST of EY664994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
14KD_DAUCA5.011e-1853.0914 kDa proline-rich protein DC2.15 OS=Daucus carot... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664994 ID=EY664994; Name=EY664994; organism=Citrus sinensis; type=EST; length=781bp
CAAAAGATTTAAACTTTAGAAGCAACGTCAACAGTACTATTACTGTGTTT
GGAAATGGCTTCTAAGTGTTCCGCAAACATTGCTCTTCTTCTCATTCTCA
ACATTGTTGTCTTCACCTTGGCCGGTGCACACAATGTGCCTTGCACTCCT
ATTCCTAAGCCACAATGCCCTCCCCCACCCCAGCCTAGTTGCCCTAGAGA
TACTCTAAAGCTAGGAGTGTGTGCTGATTTGTTGAATGATTTAGTCCATC
TTGTTGTGGGAACACCACCGGTAACACCGTGCTGCGCTCTTCTTAAAGGC
CTTGCCGATCTTGAAGCTGCTGTATGTCTTTGCACTGCCATTAAGGCTAA
CATTTTGGGCATCAACTTAAATCTCCCCATCTCCTTGAGCTTGCTCTTGA
ATTATTGTGGCAACGGTGTCCCGAGTGGCTTCCAATGCGCTTATTAGTGT
GCTCTATCTTATTTTATTAAGCACTTTAATTAATGTTTGAAGATTGTATG
GGTGTTGTTCAGTCTGTGGTGGTTACCTTTCTAGTGAATAACTTGTTTTA
CTAGAAGGGCTTANGCTTTGTTTGCCCCAAACAGGCTATTAGTCGCGTTT
GTTCTTTTTTTATTTTGACTNTGTGCTACGTACATTCAGCACAATAATTG
AAGTTATTATTTTAGAGGGGCGGAGTGGAGAGTTATATTTGTATTTTACA
TTTAATCTTGATGGATCTGCTTNCCGTCTGATTTGTTGTAATAGCCATAA
ATAAATAAACAGCGACTTATTGNTNANNNNA
back to top