EY664982

Overview
NameEY664982
Unique NameEY664982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8340 contig Csv1_Contig8340:260..1163. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664982 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.985e-27
Identity = 79/209 (37.80%), Postives = 111/209 (53.11%), Query Frame = 1
Query:    1 LIIHFHGGGFVLKSAATSTIHEYCQLIAAQIPAVVVTAEYRLAPEHRLPAAYDDGMEVLHWLKTSQDGWLQQYADFS-SCFLTGDSAGGNLAYQVGLRASAIVDDLLPLTIKGLILIKPYFSGVKRTESELRLEKDPDFPLAINDMCWELALPLGADRDHEYCNPTVGGGSKLIEKMSSLGWRVMEYVGFADPMSDRQIEFLKLLDQKG 624
            +I+ FHGG F   SA ++     C+ +     AVVV+  YR APE+R P AYDDG  VL W+ +S   WL+   D     FL GDS+GGN+ + V +RA     D+L     G IL+ P F G +RTESE RL+      +   D  W   LP G DR+H  C+P  G  SK +E +S    + +  V   D + D Q+++ + L + G
Sbjct:  106 VIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSS--SWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRIDVL-----GNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSP-FGPRSKSLEGLSFP--KSLVVVAGLDLIQDWQLKYAEGLKKAG 304          
BLAST of EY664982 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.890e-26
Identity = 67/173 (38.73%), Postives = 94/173 (54.34%), Query Frame = 1
Query:    1 LIIHFHGGGFVLKSAATSTIHEYCQLIAAQIPAVVVTAEYRLAPEHRLPAAYDDGMEVLHWLKTSQDGWLQQYADFS-SCFLTGDSAGGNLAYQVGLRASAIVDDLLPLTIKGLILIKPYFSGVKRTESELRLEKDPDFPLAINDMCWELALPLGADRDHEYCNPTVGGGSKL 516
            ++I FHGG F   SA ++    +C+ +      VVV+ +YR +PEHR P AYDDG   L+W+K+    WLQ   D +   +L GDS+GGN+A+ V +RA+        + + G IL+ P F G +RT+SE  L+      +   D  W   LP G DRDH  CNP    G  L
Sbjct:  108 VLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV--WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATN-----EGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSL 273          
BLAST of EY664982 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.386e-26
Identity = 78/210 (37.14%), Postives = 110/210 (52.38%), Query Frame = 1
Query:    1 LIIHFHGGGFVLKSAATSTIHEYCQLIAAQIPAVVVTAEYRLAPEHRLPAAYDDGMEVLHWLKTSQDGWLQQYADFSS-CFLTGDSAGGNLAYQVGLRASAIVDDLLPLTIKGLILIKPYFSGVKRTESELRLEKDPDFPLAINDMCWELALPLGADRDHEYCNPTVGGGSKLIEKMSSLGW-RVMEYVGFADPMSDRQIEFLKLLDQKG 624
            +II FHGG FV  SA+++     C+        VVV+  YR APEHR P AYDDG   L W+ +    +++   D  +  FL+GDS+GGN+A+ V +RA+   D+   + + G IL+   F G +RTESE RL+      L   D  W+  LP  ADRDH  CNP    G +L      L + + +  V   D   DRQ+ +   L + G
Sbjct:  115 VIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQP--FMRSGGDAQARVFLSGDSSGGNIAHHVAVRAA---DE--GVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRL----GGLPFAKSLIIVSGLDLTCDRQLAYADALREDG 313          
BLAST of EY664982 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.222e-25
Identity = 68/173 (39.31%), Postives = 90/173 (52.02%), Query Frame = 1
Query:    1 LIIHFHGGGFVLKSAATSTIHEYCQLIAAQIPAVVVTAEYRLAPEHRLPAAYDDGMEVLHWLKTSQDGWLQQYADFS-SCFLTGDSAGGNLAYQVGLRASAIVDDLLPLTIKGLILIKPYFSGVKRTESELRLEKDPDFPLAINDMCWELALPLGADRDHEYCNPTVGGGSKL 516
            +I+ FHGG F   SA ++     C+ +      VVV+  YR APE+  P AYDDG   L+W+ +    WL+   D     FL GDS+GGN+A+ V LRA     D+L     G IL+ P F G +RTESE  L+      +   D  W+  LP G DR+H  CNP    G  L
Sbjct:  108 VILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSR--SWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVL-----GNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSL 273          
The following BLAST results are available for this feature:
BLAST of EY664982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH1.985e-2737.80Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH4.890e-2638.73Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ6.386e-2637.14Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L1_ARATH9.222e-2539.31Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664982 ID=EY664982; Name=EY664982; organism=Citrus sinensis; type=EST; length=906bp
CTCATTATTCACTTCCACGGCGGAGGCTTCGTTTTAAAAAGCGCAGCTAC
ATCCACCATCCATGAGTACTGCCAATTGATCGCGGCCCAAATCCCTGCTG
TGGTCGTGACAGCAGAGTATCGTCTTGCCCCTGAGCATCGTCTTCCCGCA
GCCTACGATGATGGCATGGAAGTGTTGCACTGGCTCAAGACAAGTCAAGA
CGGGTGGTTACAACAGTACGCTGACTTTTCTTCCTGTTTCTTAACGGGAG
ATAGCGCTGGTGGTAACCTAGCTTACCAGGTAGGATTACGTGCATCTGCT
ATAGTTGATGATTTGTTGCCGCTGACAATCAAGGGCCTGATTTTGATCAA
ACCATACTTCAGTGGGGTCAAGAGGACGGAATCAGAGTTGAGATTGGAGA
AAGATCCTGATTTTCCGTTGGCTATTAATGATATGTGTTGGGAGTTGGCA
CTGCCACTGGGTGCAGACCGTGATCATGAGTATTGCAATCCGACGGTGGG
AGGTGGATCAAAGCTGATTGAGAAAATGAGCTCGCTCGGATGGAGGGTGA
TGGAGTACGTTGGCTTTGCTGACCCAATGAGTGACCGTCAGATTGAGTTT
CTAAAGCTTTTGGACCAAAAGGGGGTGGNCTGTGGTGGGCCATGTTGATG
GTAGTGGCCACCGCACTAGAGACTTTGTCGGTCCTACTCTGTGCGGTTAT
TTTAAAGACTTTGTTTTGTCCTCCACGAAGACTGCTTAATTAGTGAGTGG
GGGTGGGGGGTCAGTGTAATTAGGTATTTGATGTTTAATTATGATTCTCG
CNTTGGATTTTATGATNATTGCAAANATAAAAGCATTCATCTTTTTTGTT
TTAGGGTATTACACCGNANTGTTGTNCCTTTTTAAAAAAATAATAATAAG
TGGGTA
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