EY664950

Overview
NameEY664950
Unique NameEY664950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length972
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7982 contig Csv1_Contig7982:1..974. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664950 vs. ExPASy Swiss-Prot
Match: BI1L_ARATH (BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 3.464e-73
Identity = 149/246 (60.57%), Postives = 169/246 (68.70%), Query Frame = 1
Query:   76 KELGYAGVR----SKDDGKFEVDLEGGYGER-LYPGLSYGENHLRWGFIRKVYCILTAHIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGKIVLEALILTSAVVCSLTGYTFWASKKGKDISFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAAYGGISALVFCGYIVDDTDILIKRFTYDDYIXASVTLYLDILNLFIXI 798
            K  GYA V      +  GK ++DLE G GE  LYPGLSYGEN LRWGFIRKVY IL+A ++LTTL+S++ VL  P+ND                       H+YHQKHPVNLI+L LFTVSLS  V VSCA T+G+IVL+ALILT +VV SLT YTFWA+KKGKD SFLGP              +QMFFPLG TS A YGG SALVFCGYIV DTD LIKRFTYD+YI ASV LYLDILNLF+ I
Sbjct:    3 KPYGYASVSMSGIDRSAGK-DIDLEMGVGEATLYPGLSYGENQLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLTGSPGILLFLCIVPFILIWPLHIYHQKHPVNLILLALFTVSLSFTVGVSCAMTEGRIVLQALILTLSVVGSLTAYTFWAAKKGKDFSFLGPILFTSLIILVVTSFIQMFFPLGPTSVAVYGGFSALVFCGYIVYDTDNLIKRFTYDEYILASVALYLDILNLFLTI 247          
BLAST of EY664950 vs. ExPASy Swiss-Prot
Match: TMBI4_MOUSE (Transmembrane BAX inhibitor motif-containing protein 4 OS=Mus musculus GN=Tmbim4 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.635e-22
Identity = 61/204 (29.90%), Postives = 103/204 (50.49%), Query Frame = 1
Query:  187 HLRWGFIRKVYCILTAHIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGKIVLEALILTSAVVCSLTGYTFWASKKGKDISFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAAYGGISALVFCGYIVDDTDILIKRFTYDDYIXASVTLYLDILNLFIXI 798
            H+R  F+RKVY IL+  ++LTT+ S++ + +  +                          ++   HP+NL +L  FT+S SL VA      D  +VL+A I+T+AV   LT YT  + +   D +  G               +++FF    T       + AL+FCG+I+ DT  L+ R + ++Y+ A+++LY+DI+NLF+ +
Sbjct:   29 HIRMAFLRKVYSILSLQVLLTTVTSALFLYFQALRTFVHESPALIVVFALGSLGLIFALTLHRHTHPLNLYLLFAFTLSESLAVAAVVTFYDVYLVLQAFIMTTAVFLGLTAYTLQSKR---DFTKFGAGLFAGLWILCLAGFLKLFF-YSETMELVLASLGALLFCGFIIYDTHSLMHRLSPEEYVIAAISLYMDIINLFLHL 228          
BLAST of EY664950 vs. ExPASy Swiss-Prot
Match: TMBI4_HUMAN (Transmembrane BAX inhibitor motif-containing protein 4 OS=Homo sapiens GN=TMBIM4 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 9.898e-20
Identity = 61/204 (29.90%), Postives = 99/204 (48.53%), Query Frame = 1
Query:  187 HLRWGFIRKVYCILTAHIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGKIVLEALILTSAVVCSLTGYTFWASKKGKDISFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAAYGGISALVFCGYIVDDTDILIKRFTYDDYIXASVTLYLDILNLFIXI 798
            H+R  F+RKVY IL+  ++LTT+ S++ + +  +                          +   K+P+NL +L  FT+  +L VAV     D  I+L+A ILT+ V   LT YT  + K   D S  G               ++ FF              AL+FCG+I+ DT  L+ + + ++Y+ A+++LYLDI+NLF+ +
Sbjct:   29 HIRMAFLRKVYSILSLQVLLTTVTSTVFLYFESVRTFVHESPALILLFALGSLGLIFALTLNRHKYPLNLYLLFGFTLLEALTVAVVVTFYDVYIILQAFILTTTVFFGLTVYTLQSKK---DFSKFGAGLFALLWILCLSGFLKFFF-YSEIMELVLAAAGALLFCGFIIYDTHSLMHKLSPEEYVLAAISLYLDIINLFLHL 228          
BLAST of EY664950 vs. ExPASy Swiss-Prot
Match: YQE4_SCHPO (Uncharacterized membrane protein C576.04 OS=Schizosaccharomyces pombe GN=SPCC576.04 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.696e-17
Identity = 61/203 (30.05%), Postives = 92/203 (45.32%), Query Frame = 1
Query:  190 LRWGFIRKVYCILTAHIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGKIVLEALILTSAVVCSLTGYTFWASKKGKDISFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAAYGGISALVFCGYIVDDTDILIKRFTYDDYIXASVTLYLDILNLFIXI 798
            +R  F+RKVY ILTA + +T+L   I  L+   +                         +    +P N I L LFT    L +  +      +I+LEA+ +T  V  +LT +TF +     D S LG               +  F P       A+ G   LVFCGYI+ DT  ++ R++ +++I +S+ LYLD +NLFI I
Sbjct:   54 IRMAFLRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGLIMKPYSYPRNYIFLFLFTALEGLTLGTAITFFSARIILEAVFITLGVFVALTAFTFQSKW---DFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNILHRYSPEEFIMSSLMLYLDFINLFIRI 253          
BLAST of EY664950 vs. ExPASy Swiss-Prot
Match: TMBI4_CAEEL (Transmembrane BAX inhibitor motif-containing protein 4 OS=Caenorhabditis elegans GN=tmbi-4 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.361e-13
Identity = 49/145 (33.79%), Postives = 73/145 (50.34%), Query Frame = 1
Query:  364 HVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGKIVLEALILTSAVVCSLTGYTFWASKKGKDISFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAAYGGISALVFCGYIVDDTDILIKRFTYDDYIXASVTLYLDILNLFIXI 798
            HVY ++ P+N ++L  FT   ++ +       + K+VLEA ++T  VV SL  YT    +  +D S                   QMFF +            A +FC  +V D D+++ RF+ +DYI A V+LY+DILNLFI I
Sbjct:  127 HVYAREVPLNYVLLAAFTAVQAVTMGCVVTLFEAKVVLEAAVITGLVVASLFAYTL---QNKRDFSVGYASMGSLLCVLLWAGIFQMFF-MSPAVNFVINVFGAGLFCVLLVIDLDMIMYRFSPEDYICACVSLYMDILNLFIRI 267          
The following BLAST results are available for this feature:
BLAST of EY664950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BI1L_ARATH3.464e-7360.57BI1-like protein OS=Arabidopsis thaliana GN=At4g15... [more]
TMBI4_MOUSE3.635e-2229.90Transmembrane BAX inhibitor motif-containing prote... [more]
TMBI4_HUMAN9.898e-2029.90Transmembrane BAX inhibitor motif-containing prote... [more]
YQE4_SCHPO2.696e-1730.05Uncharacterized membrane protein C576.04 OS=Schizo... [more]
TMBI4_CAEEL2.361e-1333.79Transmembrane BAX inhibitor motif-containing prote... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-C11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664950 ID=EY664950; Name=EY664950; organism=Citrus sinensis; type=EST; length=972bp
CCATCGGGTNCGCATGCCAGTACTGNGNCCGGNATTCCACGCCCGACCCA
CGCGTCCGAAAAACATTTTCGCTTGAAAGAGTTGGGCTACGCGGGCGTGA
GGAGCAAAGATGACGGCAAATTCGAGGTAGATCTGGAAGGCGGATATGGG
GAGAGGCTTTATCCCGGTCTCAGCTACGGCGAGAACCACCTCCGATGGGG
TTTCATTCGCAAGGTGTACTGCATTTTGACGGCCCACATCGTTTTGACCA
CCTTGGTCTCCTCAATCACCGTTCTTTACAATCCCATCAACGATCTTCTC
AAGGGCAATTCTGGCCTTCTCCTCTTCCTTTCCATCCTCCCCTTCATCCT
GTTATGGCCACTGCATGTGTATCATCAGAAGCACCCTGTGAACTTGATTG
TCCTTGGTCTATTCACTGTATCTCTGAGTCTTCCTGTTGCTGTAAGCTGC
GCTAATACTGATGGTAAGATTGTGCTTGAAGCATTAATTCTGACCTCCGC
TGTGGTTTGTTCTTTAACTGGGTACACTTTCTGGGCCTCTAAGAAGGGCA
AAGATATCAGCTTTCTTGGACCAATTCTATTCACCAGCCTCATAATCCTC
ATTCTGACTAGCTTTATGCAGATGTTCTTTCCTCTGGGATCTACGTCCAC
TGCTGCTTATGGTGGAATTAGTGCACTGGTCTTCTGTGGATACATCGTTG
ACGACACTGACATCTTGATCAAGCGCTTCACATATGATGATTATATTNTG
GCCTCTGTCACTCTCTATCTGGATATTCTGAACCTTTTCATCTNCATTCT
GCGGGTGCTGAGATCATCACATGGTTAGTTGCTCAGTGGTCTACCCCAAG
ACGTCAATCTTTGTGGTATCACCTCATGGAGCTCATTTTGTGTGTGGCTA
CACCTGAAACTAAGTTCTGAAACAATGTATTGAAGATATAATACATCTCT
GATATGTACTCATTATCAAAAA
back to top