EY664946

Overview
NameEY664946
Unique NameEY664946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12790 contig Csv1_Contig12790:24..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664946 vs. ExPASy Swiss-Prot
Match: SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.094e-50
Identity = 96/121 (79.34%), Postives = 107/121 (88.43%), Query Frame = 2
Query:  143 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 505
            EPVDREKTCPLLLRVFTK GGHH+ ED+AVRGKEPKDEVQIYTWKDA+LRELTDLVKEV+ AARRR+ARLSFAFVYP+  G + VREVG+T +Y  R+Q DD K L+EL FEIGDYLDVAI
Sbjct:   31 EPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151          
BLAST of EY664946 vs. ExPASy Swiss-Prot
Match: SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.707e-29
Identity = 67/122 (54.92%), Postives = 81/122 (66.39%), Query Frame = 2
Query:  143 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 505
            +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of EY664946 vs. ExPASy Swiss-Prot
Match: SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.707e-29
Identity = 67/122 (54.92%), Postives = 81/122 (66.39%), Query Frame = 2
Query:  143 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 505
            +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of EY664946 vs. ExPASy Swiss-Prot
Match: SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.707e-29
Identity = 67/122 (54.92%), Postives = 81/122 (66.39%), Query Frame = 2
Query:  143 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 505
            +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of EY664946 vs. ExPASy Swiss-Prot
Match: SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.535e-29
Identity = 67/122 (54.92%), Postives = 81/122 (66.39%), Query Frame = 2
Query:  143 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 505
            +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of EY664946 vs. ExPASy Swiss-Prot
Match: SAP18_DROME (Histone deacetylase complex subunit SAP18 OS=Drosophila melanogaster GN=Bin1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.801e-26
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 2
Query:  149 VDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 505
            +DREKTCP+LLRVF   G HHS  ++   G  P +E+QIYTW+DATL ELT LV++V P  R++     FA VYP+ ++  F +RE+G T +  G++ +DD K LA+  F IGD+LD++I
Sbjct:   18 IDREKTCPMLLRVFCSTGRHHSVSEYMF-GNVPTNELQIYTWQDATLHELTSLVRDVNPDTRKKGTYFDFAVVYPNFRSNHFQMREIGVTCT--GQKGIDDNKTLAQAKFSIGDFLDISI 134          
BLAST of EY664946 vs. ExPASy Swiss-Prot
Match: SAP18_CAEEL (Probable histone deacetylase complex subunit SAP18 OS=Caenorhabditis elegans GN=C16C10.4 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.963e-24
Identity = 57/124 (45.97%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  143 EPVDREKTCPLLLRVFTKIGGHHSREDFAVR--GKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNG-RFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 505
            +P+DREK CP+LLRVF     H+   ++  R  G  P  E+Q++TW D +LRELT L+KEV P ARR+     FA V  D+   R+++R+VG T +  G R +DD K L +  FE+GD++DVAI
Sbjct:   16 KPLDREKVCPMLLRVFVANNRHNPMSEYNSRNGGSVPPSELQMHTWMDCSLRELTSLIKEVNPDARRKGTTFDFAIVQADRGSPRYILRDVGNTTN--GERGIDDNKTLQQCKFEVGDFVDVAI 137          
The following BLAST results are available for this feature:
BLAST of EY664946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SAP18_ARATH8.094e-5079.34Histone deacetylase complex subunit SAP18 OS=Arabi... [more]
SAP18_PONAB2.707e-2954.92Histone deacetylase complex subunit SAP18 OS=Pongo... [more]
SAP18_HUMAN2.707e-2954.92Histone deacetylase complex subunit SAP18 OS=Homo ... [more]
SAP18_BOVIN2.707e-2954.92Histone deacetylase complex subunit SAP18 OS=Bos t... [more]
SAP18_MOUSE3.535e-2954.92Histone deacetylase complex subunit SAP18 OS=Mus m... [more]
SAP18_DROME2.801e-2649.17Histone deacetylase complex subunit SAP18 OS=Droso... [more]
SAP18_CAEEL9.963e-2445.97Probable histone deacetylase complex subunit SAP18... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-C07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664946 ID=EY664946; Name=EY664946; organism=Citrus sinensis; type=EST; length=759bp
AAAATTAAAAAAAAAAAAAACTTCGAGACCTGAGAGAGGGATGGCGGGAG
TAGGAGAAGCGCAAAGAAGACAAGCAGGCAGGAGCAGGCCATTACATCCT
TCTGGAAGGGGCCCTCCACCACCGCCTCCTCGCCCCCGCTTCGAGCCCGT
TGATCGCGAGAAGACTTGTCCTCTGTTGCTTCGAGTTTTCACTAAGATTG
GGGGGCACCATTCTAGGGAGGATTTTGCAGTCAGAGGCAAGGAACCCAAG
GATGAGGTTCAAATTTATACATGGAAGGATGCTACTCTTCGTGAACTAAC
TGATCTGGTTAAAGAAGTAGCACCGGCTGCAAGAAGAAGGGATGCAAGGC
TTTCTTTTGCTTTTGTTTATCCCGATAAGAATGGTCGTTTTATGGTGAGA
GAGGTGGGGAAGACCTTCTCTTATGAAGGTAGGAGGCAGTTAGATGATGG
CAAAATGTTGGCTGAACTTGGCTTTGAGATTGGAGATTACTTGGATGTGG
CTATCCTATAAAGTTTAACTGTGTAATTTGTTTAGATCGGTTATGATACG
ACTAGATTTGAGACTTGGGAAAGGGCCTGTTATGTAACTTAGTGATATTT
TAGCATGATTTCACACTCTTTGTTTCAGCCCTGNAGTGTTTGTGATGATC
AACACTCAGTGCCATTTGGCTTTGTTTTTATATTTTTTTCCTAGTTGAAA
TTTTGAGAGAGATTCAGTGATGTTTGAAAGTTATTGAATTCAGAATGTCG
GTTAGGACT
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