EY664944

Overview
NameEY664944
Unique NameEY664944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664944 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 5.376e-81
Identity = 138/189 (73.02%), Postives = 155/189 (82.01%), Query Frame = 3
Query:  102 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWADGIRWADIIKPGCVNTDPIFPIISSPAPMLVTQVGLWFDPLGWGS 668
            QK+ S+ GATKASF            A  G+RSV+VSA AADP+RPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE+L+WN Q+E+VH RWAMLGAAGIFIPE LTK+G+LNTPSWYTAGEQEYFTDTTTLF++E++ IGWA+G RWADIIKPGCVNTDPIFP        +    GLWFDPLGWGS
Sbjct:   21 QKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 209          

HSP 2 Score: 80.1073 bits (196), Expect = 1.948e-14
Identity = 41/61 (67.21%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  634 WGFGLTHLAGDPXSPEMVKELRTKEIKNGRLPMLAGMGAWXQHIYTGTGPIXHLIAXLADP 816
            WG G         SP  +KELRTKEIKNGRL MLA MGAW QHIYTGTGPI +L A LADP
Sbjct:  207 WGSG---------SPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY664944 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 2.114e-77
Identity = 134/189 (70.90%), Postives = 148/189 (78.31%), Query Frame = 3
Query:  102 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWADGIRWADIIKPGCVNTDPIFPIISSPAPMLVTQVGLWFDPLGWGS 668
            +++ S+ G TKASF             T   RS +    AADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL SDPE+LRWN Q+E+VHCRWAMLGAAGIFIPELLTK+GILNTPSWYTAGEQEYFTDTTTLFIVE++ IGWA+G RWADIIKPGCVNTDPIFP        +    GLWFDPLGWGS
Sbjct:   21 RRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 209          

HSP 2 Score: 80.1073 bits (196), Expect = 1.948e-14
Identity = 41/61 (67.21%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  634 WGFGLTHLAGDPXSPEMVKELRTKEIKNGRLPMLAGMGAWXQHIYTGTGPIXHLIAXLADP 816
            WG G         SP  +KELRTKEIKNGRL MLA MGAW QHIYTGTGPI +L A LADP
Sbjct:  207 WGSG---------SPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY664944 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 9.661e-45
Identity = 74/140 (52.86%), Postives = 95/140 (67.86%), Query Frame = 3
Query:  243 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWADGIRWADIIKPGCVNTDPIFPIISSPAPMLVTQVGLWFDPLGW 662
            W PG   P +L GSLPGD GFDPLGL  DPE LRW VQ+E+V+ RWAMLG AG+ +PE+ T +GI+N P WY AG++EYF  ++TLF++E I   + +  RW DI  PG VN DPIF   S PA  +    G+ F+PL +
Sbjct:   56 WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNF 194          

HSP 2 Score: 43.8986 bits (102), Expect = 9.661e-45
Identity = 21/42 (50.00%), Postives = 27/42 (64.29%), Query Frame = 1
Query:  691 ELRTKEIKNGRLPMLAGMGAWXQHIYTGTGPIXHLIAXLADP 816
            E + KEI NGRL MLA +G   QH  TG GP  +L+  ++DP
Sbjct:  199 EAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDP 240          
BLAST of EY664944 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.793e-37
Identity = 73/155 (47.10%), Postives = 100/155 (64.52%), Query Frame = 3
Query:  198 SVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWADGIRWADIIKPGCVNTDPIFPIISSPAPMLVTQVGLWFDPLGW 662
            S   S+   +  +  W PG   P++L GSL GD GFDPLGL  DPE L+W VQ+E+V+ RWAMLG AG+ +PE+ TK+GI+N P WY AG+++YF  ++TLF++E I   + +  RW DI  PG VN DPIF   S P   +    G+ F+PL +
Sbjct:   42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNF 195          
BLAST of EY664944 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.511e-35
Identity = 73/157 (46.50%), Postives = 92/157 (58.60%), Query Frame = 3
Query:  195 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY-TAGEQEYFTDTTTLFIVEMIFIGWADGIRWADIIKPGCVNTDPIFPIISSPAPMLVTQVGLWFDPLGW 662
            R V+V A  +      W PG   P +LDGSL GD GFDPL L  DPE LRW VQ+++V+ RWAMLG AG+ IPE+LTK G++N P W    G++ YF  ++T   V M    + +  RW DI  PG VN DPIF   S P P      G  F+PL +
Sbjct:   26 RDVAVQAKGS------WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSST-YVEIRRWQDIKNPGSVNQDPIFKSYSLP-PHECGYPGRVFNPLNF 174          

HSP 2 Score: 40.0466 bits (92), Expect = 1.511e-35
Identity = 21/42 (50.00%), Postives = 25/42 (59.52%), Query Frame = 1
Query:  691 ELRTKEIKNGRLPMLAGMGAWXQHIYTGTGPIXHLIAXLADP 816
            E + KE+ NGRL MLA +G   QH   G GP  +L   LADP
Sbjct:  178 ENKEKELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADP 219          
BLAST of EY664944 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.627e-31
Identity = 71/185 (38.38%), Postives = 97/185 (52.43%), Query Frame = 3
Query:  192 TRSVSVSAAAADP------NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWY------TAGEQEYFTDTTTLFIVEMIFIGWADGIRWADIIKPGC------VNTDPIFPIISSPAPMLVTQVGLWFDPLGWG 665
            +R   V AAA  P      +RPLWF       +LDGSLPGD+GFDPLGL SDPE        RW    E+++ R+AMLGA G   PE L K+G++      +W+       AG   Y+ D  TLF++EM  +G+A+  R+ D  KPG       +  +  F    +PA       G +F+PLG+G
Sbjct:   35 SRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPA----YPGGPFFNPLGFG 214          

HSP 2 Score: 51.2174 bits (121), Expect = 7.627e-31
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query:  685 VKELRTKEIKNGRLPMLAGMGAWXQHIYTGTGPIXHLIAXLADPV 819
            +KEL+ KE+KNGRL MLA +G + Q + TG GP  +L+  +ADPV
Sbjct:  220 LKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPV 264          
BLAST of EY664944 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.931e-31
Identity = 67/186 (36.02%), Postives = 91/186 (48.92%), Query Frame = 3
Query:  195 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWY------TAGEQEYFTDTTTLFIVEMIFIGWADGIRWADIIKPGCV--------------NTDPIFPIISSPAPMLVTQVGLWFDPLGWG 665
            R+ S        NR LWF       +LDG LPGDFGFDPLGL SDPE        +W    E+++ R+AMLGAAG   PE+L K G++      +W+       AG   Y+ D  TLF++EM  +G+A+  R+ D  KPG +              + DP +P             G  F+PLG+G
Sbjct:   40 RAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYP------------GGPLFNPLGFG 212          

HSP 2 Score: 52.7582 bits (125), Expect = 9.931e-31
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1
Query:  685 VKELRTKEIKNGRLPMLAGMGAWXQHIYTGTGPIXHLIAXLADPV 819
            +KEL+ KEIKNGRL MLA +G + Q + TG GP  +L+  LADPV
Sbjct:  218 MKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPV 262          
BLAST of EY664944 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.805e-26
Identity = 62/180 (34.44%), Postives = 89/180 (49.44%), Query Frame = 3
Query:  186 AGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVEMIFIGWADGIRWADIIKPGCVNTDPIFPIISSPAPMLVTQVGLWFDPLG 659
            A T+ ++ SA+ +    P+R L+   F G  PP +L G  PGD+G+D  GL +DPE    N + E++HCRWAMLGA G   PELL + G+      W+ AG Q       +Y  + +         ++  ++I +G  +G R A    P    TDPI+P             G  FDPLG
Sbjct:   44 ATTKKLTASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPIYP-------------GGSFDPLG 207          

HSP 2 Score: 52.373 bits (124), Expect = 3.805e-26
Identity = 27/48 (56.25%), Postives = 31/48 (64.58%), Query Frame = 1
Query:  676 PEMVKELRTKEIKNGRLPMLAGMGAWXQHIYTGTGPIXHLIAXLADPV 819
            PE   EL+ KEIKNGRL M +  G + Q I TG GPI +L   LADPV
Sbjct:  212 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 259          
BLAST of EY664944 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.082e-25
Identity = 55/165 (33.33%), Postives = 80/165 (48.48%), Query Frame = 3
Query:  195 RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWADGIRWADIIKPGCVNTDPIFPIISSPAPMLVTQVGLWFDPLG 659
            + VS S+    PNR  +   F G +P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+  G Q +      +    +L   + I   WA  +     ++   V  +P+  ++    P      G  FDPLG
Sbjct:   43 KPVSSSSPWYGPNRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYP------GGSFDPLG 200          

HSP 2 Score: 51.6026 bits (122), Expect = 4.082e-25
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 1
Query:  676 PEMVKELRTKEIKNGRLPMLAGMGAWXQHIYTGTGPIXHLIAXLADPV 819
            PE   EL+ KEIKNGRL M +  G + Q I TG GP+ +L   LADPV
Sbjct:  205 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 252          
BLAST of EY664944 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.524e-24
Identity = 54/167 (32.34%), Postives = 79/167 (47.31%), Query Frame = 3
Query:  186 AGTRSVSVSAAAADPNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWADGIRWADIIKPGCVNTDPIFPIISSPAPMLVTQVGLWFDPLG 659
            A  + VS S+     +R L+       PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +   WA  +     ++   +   P+  I+    P      G  FDPLG
Sbjct:   39 AKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYP------GGSFDPLG 199          

HSP 2 Score: 48.9062 bits (115), Expect = 1.524e-24
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 1
Query:  676 PEMVKELRTKEIKNGRLPMLAGMGAWXQHIYTGTGPIXHLIAXLADPV 819
            P+   EL+ KEIKNGRL M +  G + Q I TG GP+  L   +ADPV
Sbjct:  204 PQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPV 251          
The following BLAST results are available for this feature:
BLAST of EY664944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB12_PETHY5.376e-8173.02Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC2.114e-7770.90Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA9.661e-4552.86Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH2.793e-3747.10Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU1.511e-3546.50Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB23_PEA7.627e-3138.38Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC9.931e-3136.02Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB2B_PINSY3.805e-2634.44Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB23_NICPL4.082e-2533.33Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_WHEAT1.524e-2432.34Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-C05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664944 ID=EY664944; Name=EY664944; organism=Citrus sinensis; type=EST; length=914bp
CAAACGCCATTCATAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATG
GCTTCCGTTTGTGCTTCCCCTGCTGTTGCAGCCATCTCATCCCCCAGTTC
TCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTG
GGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCG
GTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCC
AGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCG
GCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAAC
GTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGG
AATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCAT
CCTGGTACACAGCTGGGGAGCAAGAGTACTTCACAGACACCACCACCCTG
TTCATTGTTGAGATGATATTCATAGGCTGGGCAGATGGCATACGGTGGGC
CGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGATCTTCCCCATCA
TCAGCTCACCNGCACCGATGTTGGTTACCCAAGTGGGGCTTTGGTTTGAC
CCACTTGGCTGGGGATCCCNGTTCGCCCGAAATGGTAAAGGAGCTGAGGA
CTAAGGAGATCAAGAATGGGAGATTGCCTATGTTGGCTGGGATGGGTGCC
TGGNTCCAACACATTTACACTGGCACCGGCCCCATTNGACATCTNATTGC
TNACCTTGCTGATCCTGTCATGCCACCGTTTTTGCTGCTTCACCCCCAGT
GAGATGATGACGAGCAAATGAGAGAATTTGGGGCCAGAGGAGCTTGAGAT
CAAGGATNGNTGTT
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