EY664933

Overview
NameEY664933
Unique NameEY664933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664933_ssr297 microsatellite EY664933_ssr297:297..317. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig44 contig Csv1_Contig44:400..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664933 vs. ExPASy Swiss-Prot
Match: PGKH_TOBAC (Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.606e-28
Identity = 68/86 (79.07%), Postives = 70/86 (81.40%), Query Frame = 2
Query:   32 GPI*VFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSXXXXXXXXXXXXMSHISTGGGASLELLEGKELPGVVALDEA-TPVAV 286
            GP+ VFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDS            MSHISTGGGASLELLEGK LPGV+ALDEA  PVAV
Sbjct:  396 GPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKVLPGVIALDEADAPVAV 481          
BLAST of EY664933 vs. ExPASy Swiss-Prot
Match: PGKH_WHEAT (Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 2
Query:   32 GPI*VFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSXXXXXXXXXXXXMSHISTGGGASLELLEGKELPGVVALDE 268
            GP+ VFEFDKFAVGTE+IAKKLA+LS KGVTTIIGGGDS            MSHISTGGGASLELLEGKELPGVVALDE
Sbjct:  393 GPMGVFEFDKFAVGTESIAKKLAELSKKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVVALDE 471          
BLAST of EY664933 vs. ExPASy Swiss-Prot
Match: PGKY_TOBAC (Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.161e-26
Identity = 61/80 (76.25%), Postives = 65/80 (81.25%), Query Frame = 2
Query:   32 GPI*VFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSXXXXXXXXXXXXMSHISTGGGASLELLEGKELPGVVALDEA 271
            GP+ VFEFDKFA GTEAIAKKLA+LSGKGVTTIIGGGDS            MSHISTGGGASLELLEGK LPGV+ALD+A
Sbjct:  322 GPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLAEKMSHISTGGGASLELLEGKPLPGVLALDDA 401          
BLAST of EY664933 vs. ExPASy Swiss-Prot
Match: PGKH_ARATH (Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.581e-25
Identity = 61/85 (71.76%), Postives = 65/85 (76.47%), Query Frame = 2
Query:   32 GPI*VFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSXXXXXXXXXXXXMSHISTGGGASLELLEGKELPGVVALDEATPVAV 286
            GP+ VFE +KFA GTEAIA KLA+LS KGVTTIIGGGDS            MSHISTGGGASLELLEGK LPGV+ALDEA PV V
Sbjct:  394 GPMGVFEMEKFAAGTEAIANKLAELSEKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKVLPGVIALDEAIPVTV 478          
BLAST of EY664933 vs. ExPASy Swiss-Prot
Match: PGKH_SPIOL (Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 4.600e-25
Identity = 59/85 (69.41%), Postives = 66/85 (77.65%), Query Frame = 2
Query:   32 GPI*VFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSXXXXXXXXXXXXMSHISTGGGASLELLEGKELPGVVALDEATPVAV 286
            GP+ VFEF+KFA GTEAIAKKL ++S KG TTIIGGGDS            MSHISTGGGASLELLEGK+LPGV+AL+EA PV V
Sbjct:  349 GPMGVFEFEKFAAGTEAIAKKLEEISKKGATTIIGGGDSVAAVEKVGVAEAMSHISTGGGASLELLEGKQLPGVLALNEADPVPV 433          
BLAST of EY664933 vs. ExPASy Swiss-Prot
Match: PGKY_WHEAT (Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.847e-25
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 2
Query:   32 GPI*VFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSXXXXXXXXXXXXMSHISTGGGASLELLEGKELPGVVALDEA 271
            GP+ VFEF+KFA GT+AIAK+LA+L+GKGVTTIIGGGDS            MSHISTGGGASLELLEGK LPGV+ALDEA
Sbjct:  322 GPMGVFEFEKFAAGTDAIAKQLAELTGKGVTTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKPLPGVLALDEA 401          
BLAST of EY664933 vs. ExPASy Swiss-Prot
Match: PGK_CYAP4 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=pgk PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.339e-24
Identity = 58/80 (72.50%), Postives = 63/80 (78.75%), Query Frame = 2
Query:   32 GPI*VFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSXXXXXXXXXXXXMSHISTGGGASLELLEGKELPGVVALDEA 271
            GP+ VFEFDKFAVGTEAIA  LA L+GKG +TIIGGGDS            MSHISTGGGASLELLEGKELPG+VALD+A
Sbjct:  327 GPMGVFEFDKFAVGTEAIAHSLAGLTGKGASTIIGGGDSVAAVEKVGVAEQMSHISTGGGASLELLEGKELPGIVALDDA 406          
BLAST of EY664933 vs. ExPASy Swiss-Prot
Match: PGK_PROMM (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=pgk PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.306e-23
Identity = 57/80 (71.25%), Postives = 59/80 (73.75%), Query Frame = 2
Query:   32 GPI*VFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSXXXXXXXXXXXXMSHISTGGGASLELLEGKELPGVVALDEA 271
            GP+ VFEFDKFA GT AIA  LADLSGKG  TIIGGGDS            MSHISTGGGASLELLEGK LPGV ALD+A
Sbjct:  322 GPMGVFEFDKFAAGTNAIATTLADLSGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of EY664933 vs. ExPASy Swiss-Prot
Match: PGK_PROM3 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=pgk PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.306e-23
Identity = 57/80 (71.25%), Postives = 59/80 (73.75%), Query Frame = 2
Query:   32 GPI*VFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSXXXXXXXXXXXXMSHISTGGGASLELLEGKELPGVVALDEA 271
            GP+ VFEFDKFA GT AIA  LADLSGKG  TIIGGGDS            MSHISTGGGASLELLEGK LPGV ALD+A
Sbjct:  322 GPMGVFEFDKFAAGTNAIATTLADLSGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of EY664933 vs. ExPASy Swiss-Prot
Match: PGK_SYNP6 (Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pgk PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.345e-23
Identity = 56/80 (70.00%), Postives = 61/80 (76.25%), Query Frame = 2
Query:   32 GPI*VFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSXXXXXXXXXXXXMSHISTGGGASLELLEGKELPGVVALDEA 271
            GP+ VFEFD+FAVGTEAIA+ LA L+ KG TTIIGGGDS            MSHISTGGGASLELLEGK LPGV ALD+A
Sbjct:  322 GPMGVFEFDQFAVGTEAIARSLAGLTRKGATTIIGGGDSVAAVEKVGVASEMSHISTGGGASLELLEGKVLPGVAALDDA 401          
The following BLAST results are available for this feature:
BLAST of EY664933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
PGKH_TOBAC2.606e-2879.07Phosphoglycerate kinase, chloroplastic OS=Nicotian... [more]
PGKH_WHEAT3.186e-2678.48Phosphoglycerate kinase, chloroplastic OS=Triticum... [more]
PGKY_TOBAC4.161e-2676.25Phosphoglycerate kinase, cytosolic OS=Nicotiana ta... [more]
PGKH_ARATH1.581e-2571.76Phosphoglycerate kinase, chloroplastic OS=Arabidop... [more]
PGKH_SPIOL4.600e-2569.41Phosphoglycerate kinase, chloroplastic (Fragment) ... [more]
PGKY_WHEAT7.847e-2572.50Phosphoglycerate kinase, cytosolic OS=Triticum aes... [more]
PGK_CYAP41.339e-2472.50Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_PROMM4.306e-2371.25Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM34.306e-2371.25Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_SYNP67.345e-2370.00Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664933 ID=EY664933; Name=EY664933; organism=Citrus sinensis; type=EST; length=536bp
TCCGNATTCCACAGCCCGACCCACGCGTCCGGGCCCAATTTGAGTGTTTG
AGTTTGACAAGTTCGCCGTTGGAACAGAGGCAATCGCAAAGAAGCTAGCA
GACCTCAGTGGCAAGGGCGTAACAACAATCATTGGAGGTGGAGACTCTGT
AGCCGCCGTTGAAAAAGTTGGAGTTGCCGGTGTCATGAGCCACATATCAA
CTGGTGGTGGTGCCAGTTTGGAGTTGTTGGAAGGCAAAGAGCTTCCAGGT
GTCGTTGCTCTTGATGAAGCTACACCAGTTGCCGTGTAAGATCAAAATTA
TTATTATTATTATTATTCTTTTTGGCCCACTTTTCAATGTGATTTATGTT
TGTAAACGAGAAATGAAAACCTTGTAGGAAGATATGAGTTCATCTTGTAA
ATTTTCACCTTTGTGATCAATGTATGGTCCCATTCTTGCTGAAATTGCTA
CCAATCACTGTATGGATAGGGCAAGCAGAGCCACCCAATCTTTTTCAAAT
AAATTGGCTATTTTCCTCAGTAAAAAAAAAAAAAAA
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