EY664922

Overview
NameEY664922
Unique NameEY664922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664922_ssr575 microsatellite EY664922_ssr575:575..589. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY664922 vs. ExPASy Swiss-Prot
Match: VATC_ARATH (V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.912e-47
Identity = 96/124 (77.42%), Postives = 100/124 (80.65%), Query Frame = 2
Query:   62 YVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFHFRDFEYSSGAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAGRVFXXSIGGCGLPPPFLAWGXAPSGGGEKK 433
            YVVPRSSK L+EDNEYALYTVTLF RVADNFRIAAREKGF  RDFE S  AQE+R QEL KLV DQESLRSSLLQWCYTSYGEVFSSWMHFCA R F  SI   GLPP FLA   +P+   EKK
Sbjct:  206 YVVPRSSKKLFEDNEYALYTVTLFTRVADNFRIAAREKGFQVRDFEQSVEAQETRKQELAKLVQDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRTFAESIMRYGLPPAFLACVLSPAVKSEKK 329          
BLAST of EY664922 vs. ExPASy Swiss-Prot
Match: VATC_HORVU (V-type proton ATPase subunit C OS=Hordeum vulgare GN=VATC PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.488e-26
Identity = 66/104 (63.46%), Postives = 76/104 (73.08%), Query Frame = 2
Query:   59 SYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFHFRDFEYSSGAQESRNQELEKLVHDQESLRSS-LLQWCYTSYGEVFSSWMHF-CAGRVFXXSI 364
            ++VVPRSSK LYEDNEYALYTVTLF +V DNF++ AREKGF  RDFEYS  AQESR QELEKL+ DQE +R+S +      +   VFSSW  F  A RVF  SI
Sbjct:  210 TFVVPRSSKKLYEDNEYALYTVTLFAKVVDNFKVHAREKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTSPIAMGAMLATVRVFSSWDAFSSAVRVFVESI 313          
BLAST of EY664922 vs. ExPASy Swiss-Prot
Match: VATC_CAEBR (V-type proton ATPase subunit C OS=Caenorhabditis briggsae GN=vha-11 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.909e-20
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 2
Query:   59 SYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFHFRDFEYSSGAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAGRVFXXSIGGCGLPPPFLAWGXAPSGGGEKK 433
            S VVP SSKLL E+ E+ALYTVTLF +V D F+  ARE  F  RDF Y     ++   E +KL+ +++   + L++W   ++GE+FS+++H  A RVF  S+   GLP  F A    P+ G  KK
Sbjct:  209 SMVVPGSSKLLTEEGEHALYTVTLFKKVIDEFKNIARENKFIVRDFVYDEETLKAGRTERDKLLAEKQKQYAPLIRWLKINFGEIFSAYIHIKALRVFVESVLRYGLPVNFQAAVIEPAKGQSKK 333          
BLAST of EY664922 vs. ExPASy Swiss-Prot
Match: VATC_CAEEL (V-type proton ATPase subunit C OS=Caenorhabditis elegans GN=vha-11 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.033e-19
Identity = 53/125 (42.40%), Postives = 77/125 (61.60%), Query Frame = 2
Query:   59 SYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFHFRDFEYSSGAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAGRVFXXSIGGCGLPPPFLAWGXAPSGGGEKK 433
            S VVP SSKLL E+ E+ALYTVTLF +V D F+  ARE  F  RDF Y     ++   E +KL+ +++   + L++W   ++GE+F++++H  A RVF  S+   GLP  F A    P+ G +KK
Sbjct:  208 SMVVPGSSKLLTEEGEHALYTVTLFKKVIDEFKNTARENKFIVRDFVYDEETLKAGRTERDKLMAEKQRQYAPLIRWLKINFGEIFAAYIHIKALRVFVESVLRYGLPVNFQAAVIEPAKGQQKK 332          
BLAST of EY664922 vs. ExPASy Swiss-Prot
Match: VTC1A_DANRE (V-type proton ATPase subunit C 1-A OS=Danio rerio GN=atp6v1c1a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.668e-18
Identity = 48/123 (39.02%), Postives = 72/123 (58.54%), Query Frame = 2
Query:   65 VVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFHFRDFEYSSGAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAGRVFXXSIGGCGLPPPFLAWGXAPSGGGEKK 433
            VVPRS+ LL+ED++  L+TVTLF +  D+FR  ARE  F  RDF+Y+    ++  +E+ +L  D++     L++W   ++ E F +W+H  A RVF  S+   GLP  F A    P+    KK
Sbjct:  208 VVPRSTNLLFEDHDSGLFTVTLFRKAIDDFRHKARENKFTVRDFQYNEEEMKADKEEMTRLSTDKKKQFGPLVRWLKVNFSEAFIAWVHIKALRVFVESVLRYGLPVNFQAMLLQPNKKNMKK 330          
BLAST of EY664922 vs. ExPASy Swiss-Prot
Match: VATC_MANSE (V-type proton ATPase subunit C OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.668e-18
Identity = 45/117 (38.46%), Postives = 71/117 (60.68%), Query Frame = 2
Query:   65 VVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFHFRDFEYSSGAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAGRVFXXSIGGCGLPPPFLAWGXAPS 415
            +VPRS++L+++D +Y L+TVTLF +V D F++ ARE+ F  R+F Y+     +   E+ KL+ D++     L++W   ++ E F +W+H  A RVF  S+   GLP  F A    PS
Sbjct:  207 IVPRSTQLIHQDGDYGLFTVTLFKKVVDEFKLHARERKFVVREFAYNEADLVAGKNEITKLLTDKKKQFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAALLVPS 323          
BLAST of EY664922 vs. ExPASy Swiss-Prot
Match: VTC1B_DANRE (V-type proton ATPase subunit C 1-B OS=Danio rerio GN=atp6v1c1b PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.154e-17
Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = 2
Query:   65 VVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFHFRDFEYSSGAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAGRVFXXSIGGCGLPPPFLAWGXAPSGGGEKK 433
            VVPRS+KLL+ED E  L++VTLF +  D+F+  ARE  F  RDF Y+    ++  +E+ +L  D++     L++W   ++ E F +W+H  A RVF  S+   GLP  F A    P+    KK
Sbjct:  208 VVPRSTKLLFEDQESGLFSVTLFTKAIDDFKQQARENKFMVRDFLYNEEEMKADKEEMTRLSTDKKKQFGPLVRWLKVNFSETFIAWIHIKALRVFTESVLRYGLPVNFQAMLLQPNKKNVKK 330          
BLAST of EY664922 vs. ExPASy Swiss-Prot
Match: VATC_DROME (V-type proton ATPase subunit C OS=Drosophila melanogaster GN=Vha44 PE=1 SV=5)

HSP 1 Score: 84.7297 bits (208), Expect = 6.928e-16
Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 2
Query:   65 VVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFHFRDFEYSSGAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAGRVFXXSIGGCGLPPPFLA 397
            +VPRSS+L+ ED +Y L+ VTLF +VA+ F++ ARE+ F  RDF Y+     +   E+ KL+ D++     L++W   ++ E F + +H  A RVF  S+   GLP  F A
Sbjct:  657 IVPRSSQLIQEDADYCLFNVTLFKKVAEEFKLHARERKFIVRDFVYNEEELAAGKNEMTKLMTDKKKQFGPLVRWLKVNFSEAFCALIHVKALRVFVESVLRYGLPVNFQA 767          
BLAST of EY664922 vs. ExPASy Swiss-Prot
Match: VATC1_RAT (V-type proton ATPase subunit C 1 OS=Rattus norvegicus GN=Atp6v1c1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.928e-16
Identity = 47/123 (38.21%), Postives = 67/123 (54.47%), Query Frame = 2
Query:   65 VVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFHFRDFEYSSGAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAGRVFXXSIGGCGLPPPFLAWGXAPSGGGEKK 433
            VVPRSS +L ED +  L  VTLF +  D+FR  ARE  F  RDF+Y+     +  +E+ +L  D++     L++W   ++ E F +W+H  A RVF  S+   GLP  F A    P+    KK
Sbjct:  208 VVPRSSNVLSEDQDSYLCNVTLFKKAVDDFRHKARENKFIVRDFQYNEEEMRADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHIKALRVFVESVLRYGLPVNFQAMLLQPNKKSVKK 330          
BLAST of EY664922 vs. ExPASy Swiss-Prot
Match: VATC1_MOUSE (V-type proton ATPase subunit C 1 OS=Mus musculus GN=Atp6v1c1 PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 6.928e-16
Identity = 47/123 (38.21%), Postives = 68/123 (55.28%), Query Frame = 2
Query:   65 VVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFHFRDFEYSSGAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAGRVFXXSIGGCGLPPPFLAWGXAPSGGGEKK 433
            VVPRSS +L ED +  L  VTLF +  D+FR  ARE  F  RDF+Y+    ++  +E+ +L  D++     L++W   ++ E F +W+H  A RVF  S+   GLP  F A    P+    KK
Sbjct:  208 VVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMTRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHIKALRVFVESVLRYGLPVNFQAMLLQPNKKSVKK 330          
The following BLAST results are available for this feature:
BLAST of EY664922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
VATC_ARATH9.912e-4777.42V-type proton ATPase subunit C OS=Arabidopsis thal... [more]
VATC_HORVU1.488e-2663.46V-type proton ATPase subunit C OS=Hordeum vulgare ... [more]
VATC_CAEBR7.909e-2043.20V-type proton ATPase subunit C OS=Caenorhabditis b... [more]
VATC_CAEEL1.033e-1942.40V-type proton ATPase subunit C OS=Caenorhabditis e... [more]
VTC1A_DANRE5.668e-1839.02V-type proton ATPase subunit C 1-A OS=Danio rerio ... [more]
VATC_MANSE9.668e-1838.46V-type proton ATPase subunit C OS=Manduca sexta PE... [more]
VTC1B_DANRE2.154e-1739.02V-type proton ATPase subunit C 1-B OS=Danio rerio ... [more]
VATC_DROME6.928e-1639.64V-type proton ATPase subunit C OS=Drosophila melan... [more]
VATC1_RAT6.928e-1638.21V-type proton ATPase subunit C 1 OS=Rattus norvegi... [more]
VATC1_MOUSE6.928e-1638.21V-type proton ATPase subunit C 1 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-A01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664922 ID=EY664922; Name=EY664922; organism=Citrus sinensis; type=EST; length=839bp
GAATTCGACCCACNCGTACGCTCCCANAGGTGGGGGTGGCTAGCTGTGAG
AATAGCGTAGCTATGTGGTCCCCAGGTCCTCCAAGCTATTGTATGAGGAT
AATGAATATGCCCTTTACACTGTCACACTATTTGGACGTGTTGCAGACAA
TTTCAGAATAGCTGCGCGTGAGAAGGGCTTCCATTTTCGTGATTTTGAAT
ATAGTTCTGGAGCACAAGAAAGTCGTAATCAGGAGTTGGAAAAATTAGTT
CACGACCAAGAAAGCTTGAGAAGCTCTCTTTTGCAATGGTGCTATACCAG
TTACGGCGAGGTTTTTAGTTCCTGGATGCATTTTTGTGCTGGGCGTGTGT
TTGNCGNGAGCATTGGGGGGTGTGGGTTGCCGCCGCCTTTCTTGGCGTGG
GGGNGGGCTCCCTCCGGGGGGGGGGAAAAAAAAGGGCGGCGGTCGCTGGG
GACCGGGCGGCGNGGCCCCCNCCCTTCGGGGACCCCCGCTGCGGCCGGNT
GGTGCTCGCCGCGGGGGGGGGCCGGTGCGGTGGCTGGGCGGGGGCCCGCC
GGCCGGGGGGGTGGTGCGGGGGGCGCCGGGCCGGGCCGGGGGGGTGGCGC
GAAACTGGCGTGGGCGGGCCGCCCGCCGGCGGAGCCGGGGGGNCGGCCGC
GCCCCGGAAGGGGGCGGCGGGGCGCGGGGCGCGGGGGCCCGCGCCGGGGG
GGGCGGGGGGGGGGCGGCGGGCGGGGGGGGGAGGGAGCGCGGGGGGCCGG
GGGGCGGCGGGGGGTCGGGCCCCCGGCGGNGNCGCGACGGCGGGGGGCGC
GGTTGGGGGNCGCGCGGCCCGGGGCGGGGGCCGCCGCGN
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