EY664918

Overview
NameEY664918
Unique NameEY664918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664918_ssr18 microsatellite EY664918_ssr18:18..29. BLAST: Citrus ESTs to Prunus persica proteins V1
EY664918_ssr156 microsatellite EY664918_ssr156:156..173. BLAST: Citrus ESTs to Prunus persica proteins V1
EY664918_ssr322 microsatellite EY664918_ssr322:322..331. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY664918 vs. ExPASy Swiss-Prot
Match: CSK2E_ARATH (Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.187e-34
Identity = 84/173 (48.55%), Postives = 101/173 (58.38%), Query Frame = 1
Query:  316 MYRER-------GAGWSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSVLLGKHPADHQRDSRSASLSKNHASDVP*CKHLSDLAXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGSSPYYXYALDLIWXXESSHGENVT 813
            MY++R       G G S+SE++ G +DRKRINDALDK L++SSPSTSR     KD   +     A  Q  SRS  +  +  S+       SD++                      WISWFCNLRGNEFFCEVD+DYIQDDFNLCGLSG  PYY YALDLI   ESS+G+  T
Sbjct:    1 MYKDRSGGGIMGGGGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRV-FTSKDKDSVPSTSTAKSQLHSRSPDVESDTDSEG------SDVSGSEGDDTS--------------WISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNGDMFT 152          
BLAST of EY664918 vs. ExPASy Swiss-Prot
Match: CSK2B_ARATH (Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.307e-33
Identity = 95/198 (47.98%), Postives = 106/198 (53.54%), Query Frame = 1
Query:  316 MYRERGAGWSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSV---------LLGKHPAD--HQRDSRSASLSKNHASDVP*CKHLSDLAXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGSSPYYXYALDLIWXXESSHGENVTXXXXXXXXXXXXALWA-IHAR 873
            MYR+RG   S+ EVV    DRKRINDA    LER SPSTSR  +NGK             L+GK  ++  + RDSRSASLSKN+            ++                      WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLS   PYY YALDLI   ESS GE  T             L+  IHAR
Sbjct:    1 MYRDRGTVNSRPEVV----DRKRINDA----LERPSPSTSR-QVNGKGKGTVTAATTTANLIGKQQSNNINHRDSRSASLSKNNT-----------VSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQGEMFTEEQNELIESAAEMLYGLIHAR 178          
BLAST of EY664918 vs. ExPASy Swiss-Prot
Match: CSK2C_ARATH (Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.052e-33
Identity = 93/191 (48.69%), Postives = 101/191 (52.88%), Query Frame = 1
Query:  316 MYRERGAGWSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGK----DMSVLLGKHPADHQRDSRSASLSKNHASDVP*CKHLSDLAXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGSSPYYXYALDLIWXXESSHGENVTXXXXXXXXXXXXALWA-IHAR 873
            MYRERG   SKSEVV    DRKRIN+  D    R S S S+  +NGK      SVL+GK     +  SRS S+SK + SD          A                      WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLS   PYY YALDLI   ESSHGE  T             L+  IHAR
Sbjct:    1 MYRERGMVGSKSEVV----DRKRINEIHDN---RPSHSMSQP-VNGKGKVTSTSVLMGKQQLHDKESSRSGSISKTNISD----------AVDISDTDSEESEVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHGEMFTEEQNELIESAAEMLYGMIHAR 173          
BLAST of EY664918 vs. ExPASy Swiss-Prot
Match: CSK2D_ARATH (Casein kinase II subunit beta-3 OS=Arabidopsis thaliana GN=CKB3 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.172e-30
Identity = 76/177 (42.94%), Postives = 98/177 (55.37%), Query Frame = 1
Query:  316 MYRER----GAGWSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTI-NGKDM------SVLLGKHPADHQRDSRSASLSKNHASDVP*CKHLSDLAXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGSSPYYXYALDLIWXXESSHGENVT 813
            MY+ER    G G S+SE++ G +DRKRINDAL+K+LE+SS ST+ + + + KD       S        + + DS  + +S +   D                                 WISWFCNLRGN+FFCEVD+DYIQDDFNLCGLSG  PYY YALDLI   ++S+ E  T
Sbjct:    1 MYKERSGGGGGGSSRSEILGGAIDRKRINDALNKKLEKSSTSTTTSRVFSSKDKDPFSFTSTKTQLPDVESETDSEGSDVSGSEGDDTS-------------------------------WISWFCNLRGNDFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVDASNSEMFT 146          
BLAST of EY664918 vs. ExPASy Swiss-Prot
Match: CSK2B_XENLA (Casein kinase II subunit beta OS=Xenopus laevis GN=csnk2b PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.224e-14
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 1
Query:  643 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGSSPYYXYALDLIWXXE 789
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+   P+Y  ALD+I   E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of EY664918 vs. ExPASy Swiss-Prot
Match: CSK2B_RAT (Casein kinase II subunit beta OS=Rattus norvegicus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.224e-14
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 1
Query:  643 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGSSPYYXYALDLIWXXE 789
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+   P+Y  ALD+I   E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of EY664918 vs. ExPASy Swiss-Prot
Match: CSK2B_RABIT (Casein kinase II subunit beta OS=Oryctolagus cuniculus GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.224e-14
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 1
Query:  643 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGSSPYYXYALDLIWXXE 789
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+   P+Y  ALD+I   E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of EY664918 vs. ExPASy Swiss-Prot
Match: CSK2B_PIG (Casein kinase II subunit beta OS=Sus scrofa GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.224e-14
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 1
Query:  643 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGSSPYYXYALDLIWXXE 789
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+   P+Y  ALD+I   E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of EY664918 vs. ExPASy Swiss-Prot
Match: CSK2B_MOUSE (Casein kinase II subunit beta OS=Mus musculus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.224e-14
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 1
Query:  643 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGSSPYYXYALDLIWXXE 789
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+   P+Y  ALD+I   E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of EY664918 vs. ExPASy Swiss-Prot
Match: CSK2B_HUMAN (Casein kinase II subunit beta OS=Homo sapiens GN=CSNK2B PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.224e-14
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 1
Query:  643 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGSSPYYXYALDLIWXXE 789
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+   P+Y  ALD+I   E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
The following BLAST results are available for this feature:
BLAST of EY664918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CSK2E_ARATH8.187e-3448.55Putative casein kinase II subunit beta-4 OS=Arabid... [more]
CSK2B_ARATH5.307e-3347.98Casein kinase II subunit beta OS=Arabidopsis thali... [more]
CSK2C_ARATH9.052e-3348.69Casein kinase II subunit beta' OS=Arabidopsis thal... [more]
CSK2D_ARATH7.172e-3042.94Casein kinase II subunit beta-3 OS=Arabidopsis tha... [more]
CSK2B_XENLA4.224e-1469.39Casein kinase II subunit beta OS=Xenopus laevis GN... [more]
CSK2B_RAT4.224e-1469.39Casein kinase II subunit beta OS=Rattus norvegicus... [more]
CSK2B_RABIT4.224e-1469.39Casein kinase II subunit beta OS=Oryctolagus cunic... [more]
CSK2B_PIG4.224e-1469.39Casein kinase II subunit beta OS=Sus scrofa GN=CSN... [more]
CSK2B_MOUSE4.224e-1469.39Casein kinase II subunit beta OS=Mus musculus GN=C... [more]
CSK2B_HUMAN4.224e-1469.39Casein kinase II subunit beta OS=Homo sapiens GN=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664918 ID=EY664918; Name=EY664918; organism=Citrus sinensis; type=EST; length=898bp
CCACGCGTCCGCGAAAAATATATATATATTATTCTTCCGATTTTATCCCA
CTATCCCTCTCTCTTCCTCTCTAAATCTGTCATTCTCTTTGCCCTGTTTT
TTTAACTCAATAATAATCTCTAGCAAGAGACAGCATGGGCTGAGCCGCTA
AGCCTTATATATATATATATATAAAAAAAAAAAAAATACACACAAACTGC
TTCCCATCAAAAACCCTAGGCAGGGTTAGTGTGGTAATTTCTCGCGCCAT
GTGTCGGTGATAATCGTGTAGCCTTTAATAAAAAAAAAATCGTCATCGGC
GAAGGAGGATACAAGATGTATAGAGAGAGAGGGGCCGGTTGGTCCAAGTC
GGAAGTGGTTGTCGGTCCAGTTGATCGGAAGCGGATTAACGATGCATTAG
ATAAGCAGCTGGAGAGATCTTCGCCCTCCACTTCGAGAACGACGATCAAC
GGCAAGGATATGTCCGTTCTCTTGGGGAAGCATCCGGCTGATCATCAGCG
AGACTCTCGCTCCGCTTCTCTCTCCAAAAATCATGCTTCTGATGTTCCTT
GATGCAAACACTTATCTGATTTGGCTGTAGAAGAATCTGAAACAGACAGT
GAAGAGTCAGATGTCAGTGGTTCTGAGGGAGATGACACATCTTGGATCTC
ATGGTTTTGCAATCTTCGAGGAAATGAATTCTTCTGTGAAGTGGATGATG
ACTATATACAAGATGATTTTAACCTCTGTGGGCTAAGCGGGTCAAGTCCA
TATTATGNATATGCACTTGACTTGATTTGGNATGNTGAGTCCTCTCATGG
TGAAAATGTCACTGAAGAACAAAATGAATANNTGAATCTGCAGCAGAATG
CCTTATGGGCTATTCATGCTCGATCATACTGACTACCAAGGAATGGCT
back to top