EY664916

Overview
NameEY664916
Unique NameEY664916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY664916 vs. ExPASy Swiss-Prot
Match: FB233_ARATH (F-box protein At4g12560 OS=Arabidopsis thaliana GN=At4g12560 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 45/108 (41.67%), Postives = 62/108 (57.41%), Query Frame = 2 
Query:   14 SISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTVKIDGGPDSFVACICVESLI-----PLDNGSHGXXXXXXXXXXXXXTQCRKKRDDFLSKGFKLVL 322
            S+ SF ++RPL+ S +    KVLLE+N  KLVW+D + KK+ T++I   P S+ A + V SL+      L+N  +               Q  K+RDDFLSKGFKLVL
Sbjct:  308 SVKSFSYMRPLVYSKDK--KKVLLELNNTKLVWFDLESKKMSTLRIKDCPSSYSAELVVSSLVLGCKGDLNNIKYRKEQQAKEAREAKIMQNTKRRDDFLSKGFKLVL 413
The following BLAST results are available for this feature:
BLAST of EY664916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB233_ARATH2.843e-1341.67F-box protein At4g12560 OS=Arabidopsis thaliana GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-H07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664916 ID=EY664916; Name=EY664916; organism=Citrus sinensis; type=EST; length=672bp
CCACGCGTCCGGATCTATAAGTTCTTTTAGGTTTTTGCGACCTTTAATTT
GTTCAAATGAGGATGGTGGTGATAAAGTTCTCTTGGAAGTGAATGGCGAG
AAGCTTGTATGGTATGATTGGAAAAGGAAAAAACTGAAGACTGTGAAGAT
AGATGGTGGTCCAGATTCGTTTGTGGCTTGCATATGTGTAGAAAGCCTTA
TTCCCCTTGATAATGGTAGTCATGGAATTATTCTGAAGAAGCTGCAGGAG
CAAAAGGAAAAGAAGACACAATGTAGGAAGAAGAGGGATGATTTCCTGTC
AAAAGGATTTAAACTGGTTTTATGATCAATTAACCAAAGACGCAGAATAC
GAACAAAGTGAGAAGGGAGGATGACATGTGTGTCAAGCATATGGCAATAA
CACAAAGTTCAATGGAAATGGTATAGAAGAATGTTTTTAACGCATATCAT
ACTTGTGTTAGAAGAACTGCACTGGGTTTTCTTTGCTTTTACAGGGCCTA
ACTCTGTTTTTATTTTAAATTTGTCTAAAGTGAAACTTTGACTTGTATAA
GTATTGCAAGAACAGACAATATATATAATGACTTTGGAAGGTTGTACCAC
TTACATGAATGGCTCAAACAAATTTATTCCATGCAGGATGGATTTGTTGT
TCAAAAAAAAAAAAAAAAAAAA
back to top