EY664897

Overview
NameEY664897
Unique NameEY664897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664897_ssr138 microsatellite EY664897_ssr138:138..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2833 contig Csv1_Contig2833:93..1019. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664897 vs. ExPASy Swiss-Prot
Match: C19L2_MOUSE (CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.494e-38
Identity = 76/185 (41.08%), Postives = 117/185 (63.24%), Query Frame = 3
Query:  204 GRAD-DEYDFEEGPSRKS--RKNRGANDNKGAERAIA--RCIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKXAPVYFKKGIDEAEDEWSQHNAKKLIDTSVK 743
            G++D D Y  ++    K+  +++ G  +     RAIA  + +  +  +CL+CF++   P+HL+VAI    YL LP +QS+  GHC I+ +QH  A   +D  VW+EI+ F+K L+ MF  +E + +FLET MGL ++  H + ECIPLP+++   AP+YFKK I E+++EWS +  KKLID S K
Sbjct:  620 GKSDEDNYTLDDMFVSKAAEKEHLGKKEESQRRRAIAEHQSLAAKMAKCLYCFDSSQFPKHLIVAIGVKVYLCLPSFQSLTEGHCFIVPLQHHQAATVLDEDVWEEIQMFRKSLVKMFEDKELDCIFLETNMGL-KKHYHMVYECIPLPKEVGDMAPIYFKKAIMESDEEWSMN--KKLIDLSSK 801          

HSP 2 Score: 35.4242 bits (80), Expect = 3.494e-38
Identity = 17/44 (38.64%), Postives = 23/44 (52.27%), Query Frame = 1
Query:  757 SIPKDFPYXHVXVGLNKGFRPCXDDETQFKSSFGLNVIRSMLRL 888
            S+P+  PY  V  GL  GF    +D+ +F   FG  +I  ML L
Sbjct:  806 SVPRGLPYFAVDFGLQGGFAHIIEDQYRFPHYFGKEIIGGMLDL 849          
BLAST of EY664897 vs. ExPASy Swiss-Prot
Match: C19L2_HUMAN (CWF19-like protein 2 OS=Homo sapiens GN=CWF19L2 PE=1 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 4.918e-37
Identity = 70/165 (42.42%), Postives = 105/165 (63.64%), Query Frame = 3
Query:  255 RKNRGANDNKGAERAIA--RCIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKXAPVYFKKGIDEAEDEWSQHNAKKLIDTSVK 743
            R+  G  +    ++AIA  R +  Q E+CL+CF++   P+HL+VAI    YL LP  +S+  GHC I+ +QH  A   +D  +W+EI+ F+K L+ MF  +  + +FLET M + +Q  H + ECIPLP+++   AP+YFKK I E+++EWS +  KKLID S K
Sbjct:  643 RERLGEEEENQRKKAIAEHRSLAAQMEKCLYCFDSSQFPKHLIVAIGVKVYLCLPNVRSLTEGHCLIVPLQHHRAATLLDEDIWEEIQMFRKSLVKMFEDKGLDCIFLETNMSMKKQ-YHMVYECIPLPKEVGDMAPIYFKKAIMESDEEWSMN--KKLIDLSSK 804          

HSP 2 Score: 35.4242 bits (80), Expect = 4.918e-37
Identity = 16/42 (38.10%), Postives = 23/42 (54.76%), Query Frame = 1
Query:  757 SIPKDFPYXHVXVGLNKGFRPCXDDETQFKSSFGLNVIRSML 882
            S+P+  PY  V  GL+ GF    +D+ +F   FG  +I  ML
Sbjct:  809 SVPRGLPYFSVDFGLHGGFAHVIEDQHKFPHYFGKEIIGGML 850          
BLAST of EY664897 vs. ExPASy Swiss-Prot
Match: C19L2_XENTR (CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf19l2 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.173e-35
Identity = 73/190 (38.42%), Postives = 109/190 (57.37%), Query Frame = 3
Query:  216 DEYDFEEGPSRKSRKNRGANDNKGAERAIA----RCIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKXAPVYFKKGIDEAEDEWSQHNAKKLIDTSVKGXVWFNSKGL 773
            D Y  ++    K+ K    +  +  ER  A    R +    E+C FCF+N   P+HL+VAI    YL LP   S+  GHC I+ +QH  A+  +D  +++EI+ F+K L+ MF  +  + VFLE+ +   ++R H + ECIPLP+++   AP+YFKK I E+++EWS +  KKLID S K       KGL
Sbjct:  663 DYYTLDDMFVTKAAKKEHTDKEEERERMQAMHEHRSLTATMEKCRFCFDNAELPKHLIVAIGTKVYLCLPNHLSLTEGHCLIVPLQHHTASTLLDEDIYNEIQVFRKALVRMFESKGLDCVFLESNI-YARKRLHLVYECIPLPKEVGDMAPIYFKKAIMESDEEWSMN--KKLIDLSTKDIRRAVPKGL 849          

HSP 2 Score: 37.7354 bits (86), Expect = 1.173e-35
Identity = 18/44 (40.91%), Postives = 24/44 (54.55%), Query Frame = 1
Query:  757 SIPKDFPYXHVXVGLNKGFRPCXDDETQFKSSFGLNVIRSMLRL 888
            ++PK  PY  V  GL  G+    +DE +F S FG  +I  ML L
Sbjct:  844 AVPKGLPYFSVDFGLQGGYAHVIEDEHKFPSYFGKEIIGGMLDL 887          
BLAST of EY664897 vs. ExPASy Swiss-Prot
Match: C19L2_DANRE (CWF19-like protein 2 OS=Danio rerio GN=cwf19l2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.014e-33
Identity = 65/183 (35.52%), Postives = 108/183 (59.02%), Query Frame = 3
Query:  204 GRAD-DEYDFEEG--PSRKSRKNRGANDNKGAERAI--ARCIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKXAPVYFKKGIDEAEDEWSQHNAKKLIDTS 737
            GR D D Y  ++    S   ++  G ++ +   +A+   R +  + E+C  CF++   P+HL++A+    YL LP   S+  GHC I+ VQH  A   +D  +W EI+ F++ L+ MF  QE + VFLET M   ++  H + EC+P+P+++   AP+YFKK I E+++EW+ +  KK++D S
Sbjct:  694 GRTDGDNYTLDDMFVSSAAQKERAGRDEERQRNKAVQETRRLAGRMEKCPHCFDSAELPKHLIIAVGTKVYLCLPNSVSLTEGHCLIVPVQHHTAATGLDEDIWGEIQMFRRALVRMFESQELDCVFLETHMN-PKRHLHMVYECVPMPRELGDMAPIYFKKAIMESDEEWAMN--KKVVDLS 873          

HSP 2 Score: 33.4982 bits (75), Expect = 3.014e-33
Identity = 15/44 (34.09%), Postives = 23/44 (52.27%), Query Frame = 1
Query:  757 SIPKDFPYXHVXVGLNKGFRPCXDDETQFKSSFGLNVIRSMLRL 888
            ++P+  PY  V  GL  GF    ++E +F   FG  ++  ML L
Sbjct:  880 AVPRGLPYFSVDFGLQGGFAHVIENEQKFPHYFGKEILGGMLDL 923          
BLAST of EY664897 vs. ExPASy Swiss-Prot
Match: C19L2_DROME (CWF19-like protein 2 homolog OS=Drosophila melanogaster GN=CG9213 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.033e-26
Identity = 58/179 (32.40%), Postives = 94/179 (52.51%), Query Frame = 3
Query:  183 NKQYS--ISGRADDEYDFEEGPSRKSRKNRGANDNKGAERAIA----RCIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKXAPVYFKKGIDEAEDEW 701
            N QY+  +S   +   D ++  + K RK   A+D +  E   A      ++   + C  CF++    + L+V++ +  YL LP +  +  GHC + ++QH      +D   W+EI NF+K L  MFA + +++VF E    L  +R H  + CIP+P    + AP YFKK I+E+E EW
Sbjct:  417 NLQYADIVSKHKNPNDDLDDIFADKVRKQISASDAEKREMQSAIREHEKLVATLDNCERCFDSAKLDKQLLVSLGDKIYLSLPWYMGLQSGHCILTTLQHVPCCTQLDEDAWEEISNFRKALTRMFAARRQDVVFYEIANKL-HRRPHLSVHCIPIPASQGEMAPFYFKKAIEESEQEW 594          

HSP 2 Score: 37.3502 bits (85), Expect = 1.033e-26
Identity = 16/44 (36.36%), Postives = 25/44 (56.82%), Query Frame = 1
Query:  757 SIPKDFPYXHVXVGLNKGFRPCXDDETQFKSSFGLNVIRSMLRL 888
            +IPK  PY  V  G++ GF    +DE +F ++F   ++  ML L
Sbjct:  611 AIPKGLPYVWVHFGMDSGFAHVIEDEDRFPANFAQEILGGMLEL 654          
BLAST of EY664897 vs. ExPASy Swiss-Prot
Match: C19L2_CAEEL (CWF19-like protein 2 homolog OS=Caenorhabditis elegans GN=B0361.2/B0361.1 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.165e-23
Identity = 55/179 (30.73%), Postives = 92/179 (51.40%), Query Frame = 3
Query:  207 RADDEYDFEEGPSRKSRKNRGANDNKGAERAIAR---CIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKXAPVYFKKGIDEAEDEWSQHNAKKLIDT 734
            R DDE   +    +K +K     D K  E+   +    I    + C  C ++    +H ++A+   TYL + +W  +   H  I+  QH  +T  +D +VWDE+R ++K L+ ++  Q ++ +F E    +     H  IEC+P+ Q+I   A +YFKK I+E E E+  +  KKLI+T
Sbjct:  194 RHDDESVDDIAEMQKGKKKSDEKDKKRKEKESIKEHKRIERSFDDCSRCIDSSRLKKHNIIAVGINTYLAVVEWDGLDDEHLIIVPTQHCSSTIQLDENVWDEMRLWRKGLVAVWKSQNRDCIFFEMSRHV-DSNPHVFIECVPVEQEIGDMASIYFKKAINECEGEYMDN--KKLIET 369          

HSP 2 Score: 34.2686 bits (77), Expect = 2.165e-23
Identity = 17/43 (39.53%), Postives = 21/43 (48.84%), Query Frame = 1
Query:  760 IPKDFPYXHVXVGLNKGFRPCXDDETQFKSSFGLNVIRSMLRL 888
            IPK F Y  V  GL+ GF    +    F S+F   +I  ML L
Sbjct:  376 IPKGFSYFAVDFGLSNGFAHVIESHDHFPSTFATEIIAGMLDL 418          
BLAST of EY664897 vs. ExPASy Swiss-Prot
Match: CWF19_SCHPO (Pre-mRNA-splicing factor cwf19 OS=Schizosaccharomyces pombe GN=cwf19 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.403e-20
Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = 3
Query:  327 ERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKXAPVYFKKGIDEAEDEWSQHNAKKLIDT 734
            + C  C     +P   V+++++  Y+ LP    +   HC I+   H + T + D   WDEIRNF KC+ +MF      ++F E      Q+  H  IECIP+ ++I   AP YF++ +  +++EWSQH  +K+IDT
Sbjct:  410 DTCPLCLNYETQPLAPVISLSHRAYVSLPTQPELAKYHCLIVPTGHRINTLSCDEDEWDEIRNFMKCIALMFDSMNLGVIFYENAPS-PQRYMHTAIECIPVSKRILSLAPAYFREALSTSDEEWSQH--RKIIDT 542          
The following BLAST results are available for this feature:
BLAST of EY664897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
C19L2_MOUSE3.494e-3841.08CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE... [more]
C19L2_HUMAN4.918e-3742.42CWF19-like protein 2 OS=Homo sapiens GN=CWF19L2 PE... [more]
C19L2_XENTR1.173e-3538.42CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf1... [more]
C19L2_DANRE3.014e-3335.52CWF19-like protein 2 OS=Danio rerio GN=cwf19l2 PE=... [more]
C19L2_DROME1.033e-2632.40CWF19-like protein 2 homolog OS=Drosophila melanog... [more]
C19L2_CAEEL2.165e-2330.73CWF19-like protein 2 homolog OS=Caenorhabditis ele... [more]
CWF19_SCHPO2.403e-2034.56Pre-mRNA-splicing factor cwf19 OS=Schizosaccharomy... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664897 ID=EY664897; Name=EY664897; organism=Citrus sinensis; type=EST; length=927bp
CCTCTGGTCTTCAGTTTCAGCAAGAAGTTGAGAAAATGAAGGCAAAGCAG
GGTGCGGCTGATAATTCTACTAAACATCAAGATGTTGGAAGCTTGGGCAG
GCATGTTATTTATGATTTGTATGTTCGAAAAAGGAAGGATGATGATGATG
CTGATAGGAATCTAGCCCAAAAGATAATGCATAATAAACAATACAGTATA
TCTGGTCGGGCCGATGATGAATATGATTTTGAAGAAGGTCCAAGTCGAAA
GTCCCGGAAGAATAGAGGAGCAAATGATAATAAGGGTGCTGAAAGAGCTA
TTGCGAGATGTATCATGACTCAACAAGAGCGCTGCCTGTTTTGCTTTGAG
AATCCAAACCGGCCAAGACACCTTGTTGTGGCAATAGCAAATTTTACTTA
TTTGGTGTTGCCACAGTGGCAGTCTGTCGTGCCTGGTCATTGCTGCATCT
TGTCAGTGCAGCATGAGTTGGCGACTAGAACCGTTGACAGTCATGTGTGG
GATGAAATTCGTAACTTCAAGAAATGCCTTATCATGATGTTTGCCAAGCA
AGAGAAGGAATTAGTGTTTCTCGAAACAGTGATGGGTTTGGGACAACAGC
GTCGCCATTGTTTGATTGAGTGCATTCCGTTGCCCCAAAAAATTGCGAAA
CANGCCCCTGTCTATTTCAAGAAAGGCATTGATGAAGCTGAAGATGAATG
GAGCCAGCACAATGCAAAGAAGTTAATTGATACCAGTGTGAAGGGCTTNG
TGTGGTTCAATTCCAAAGGACTTTCCTTACTTNCACGTTGANGTTGGTCT
AAATAAGGGGTTTCGTCCATGTATNGATGATGAAACACAGTTTAAAAGCA
GCTTCGGACTAAACGTCATAAGAAGCATGCTCCGGCTTNCTGAAGAAGAA
TGTACCGTCATAGGAAGCATGAATCTG
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