EY664893

Overview
NameEY664893
Unique NameEY664893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664893 vs. ExPASy Swiss-Prot
Match: Y5175_ARATH (UPF0706 protein At5g01750 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.096e-42
Identity = 80/120 (66.67%), Postives = 102/120 (85.00%), Query Frame = 2
Query:   23 QLMSAHDRWQVFRGESTESCDLIFTAKRSSVFQLKTKLDVFLANNREDV-CDFKVKGGWLDRSCVVYAGDPDSSTIVAHMHKKHSVKSILLGKDKFMVTVYPNVDYAFIISLIVILDEIN 379
            +++S HDRWQVFRG ST+  DL++T KRSS+ QLKTKLDVFL +N+++  CDF+VKG WL+RSCVVYAG+ D+  IVA MH+KH+V+S+ LGKD F VTVYPNVDYAFI SL+VILD++N
Sbjct:   94 KMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDA--IVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVN 211          
The following BLAST results are available for this feature:
BLAST of EY664893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5175_ARATH5.096e-4266.67UPF0706 protein At5g01750 OS=Arabidopsis thaliana ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664893 ID=EY664893; Name=EY664893; organism=Citrus sinensis; type=EST; length=525bp
CGCCTCGACCCACGCGTCCGTGCAGTTAATGTCAGCTCATGACAGATGGC
AAGTTTTCAGGGGAGAAAGTACAGAGTCCTGTGATCTCATCTTTACTGCT
AAAAGATCATCAGTGTTCCAGCTAAAGACCAAATTAGATGTGTTCTTAGC
TAATAACAGAGAGGACGTTTGTGATTTTAAAGTCAAAGGAGGTTGGCTGG
ACAGATCTTGTGTTGTTTATGCTGGGGACCCAGACTCTTCCACAATTGTT
GCCCATATGCATAAGAAGCACTCTGTCAAAAGTATCTTGCTTGGAAAGGA
CAAGTTCATGGTGACAGTGTATCCGAATGTTGATTATGCATTCATTATTT
CCCTTATTGTAATTCTTGATGAAATTAATAGCTAAAACGACTAATATTGT
TTGCTATTGCTACAATTCGGTTCAGATTGACCGGAAAAATAGTGATATAA
TATGTTGATAAATAGGGCGAGTCACTTGCTCAAGTCTATTCTTCTGGTTG
AATATCAAAAAAAAAAAAAAAAAAA
back to top