EY664891

Overview
NameEY664891
Unique NameEY664891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1292 contig Csv1_Contig1292:125..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.860e-69
Identity = 120/186 (64.52%), Postives = 135/186 (72.58%), Query Frame = 2
Query:  209 PDRPLWFPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPL 766
            PDRPLWFPGSTPP WLDGSLPGD+GFDPLGLGSDPE LKW AQAEL+H RWAML  AGI IPE+L  IG++   SWY AG +EYF D TTLFV++L L+GW EGRRWADII PGCV+  P  P       DVGYPGG+WFDP+ WG  SP  +  LRTK   +GRLAMLA  G  FQ       P+
Sbjct:   63 PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 248          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.574e-68
Identity = 119/197 (60.41%), Postives = 137/197 (69.54%), Query Frame = 2
Query:  176 KGVSSVCEPLPPDRPLWFPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPL 766
            +  ++VC    PDRPLWFPGSTPP WLDGSLPGD+GFDPLGL SDPE L+W  QAEL+H RWAML  AGI IPE L  IG++   SWY AG +EYF D TTLF+V+L L+GW EGRRWADII PGCV+  P  P       DVGYPGG+WFDP+ WG  SP  +  LRTK   +GRLAMLA  G  FQ       P+
Sbjct:   52 RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 248          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.449e-45
Identity = 93/182 (51.10%), Postives = 114/182 (62.64%), Query Frame = 2
Query:  224 WFPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK 769
            W PG   P +L GSL GD GFDPLGL  DPE LKWF QAEL++GRWAML VAG+L+PE    IG+I    WYDAG  +YFA  +TLFV++  L  +VE RRW DI NPG V+  P     + PK +VGYPGGI F+P+ +      P    + K   +GRLAMLAF GF  Q  +    P +
Sbjct:   57 WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFE 232          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.117e-45
Identity = 93/180 (51.67%), Postives = 114/180 (63.33%), Query Frame = 2
Query:  224 WFPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSP 763
            W PG   P +L GSLPGD GFDPLGL  DPE L+WF QAEL++GRWAML VAG+L+PE   SIG+I    WY AG  EYFA  +TLFV++  L  +VE RRW DI NPG V+  P     + P  +VGYPGGI F+P+ +      P +  + K   +GRLAMLAF GF  Q  +    P
Sbjct:   56 WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFA-----PTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGP 229          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.162e-33
Identity = 80/183 (43.72%), Postives = 105/183 (57.38%), Query Frame = 2
Query:  224 WFPGSTPPSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYD-AGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSPLK 769
            W PG   P++LDGSL GD GFDPL L  DPE L+WF QA++++GRWAML VAG+LIPE L   GL+    W    G   YFA  +T   V ++   +VE RRW DI NPG V+  P     + P  + GYPG + F+P+ +        +  + K   +GRLAMLAF GF  Q  +    P +
Sbjct:   36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMS-STYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRV-FNPLNFAP------LENKEKELANGRLAMLAFLGFLVQHNVHGKGPFE 210          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.539e-31
Identity = 85/201 (42.29%), Postives = 114/201 (56.72%), Query Frame = 2
Query:  212 DRPLWFPGSTPPSWLDGSLPGDYGFDPLGLGSDPELL------KWFAQAELIHGRWAMLAVAGILIPEWLESIGLIEN---FSWYD------AGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKT--KPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSP 763
            DRPLWF      S+LDGSLPGDYGFDPLGL SDPE        +W A  E+I+GR+AML   G + PE+L  +GLI      +W+       AG+  Y+AD  TLFV+++ALMG+ E RR+ D   PG +  Q  L  +       +  YPGG +F+P+ +GK     +  L+ K   +GRLAMLA  G+  Q  +    P
Sbjct:   54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGK-DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGP 252          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.951e-30
Identity = 78/182 (42.86%), Postives = 98/182 (53.85%), Query Frame = 2
Query:  245 PSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADP---TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYK------TKPKPDVGYPGGIWFDPMMW------GKRSPXPVMVLRTK--GX*DGRLAMLAFRGFCFQ 739
            P WLDGSLPGD+GFDPLGLG DP  LKW+ +AELIHGRWAMLAV GI + +    I       W++AG+      P    TL   QL LMGWVE +RW D  +P    ++   P+       +    + GYPGG +FDP+        G  +P    + R K       RLAMLA   F F+
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFE 248          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.951e-30
Identity = 77/182 (42.31%), Postives = 95/182 (52.20%), Query Frame = 2
Query:  245 PSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADP---TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPK------PDVGYPGGIWFDPMMWGKRSPXPVMV--------LRTKGX*DGRLAMLAFRGFCFQ 739
            P WLDGSLPGDYGFDPLGLG DP  LKW+ +AELIHGRWAM AV GI + +    I       W++AG+      P    TL   QL LMGWVE +RW D  +P    ++   P+    +       + GYPGG +FDP+         V V        L+       RLAMLA   F F+
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFE 243          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.192e-29
Identity = 84/201 (41.79%), Postives = 110/201 (54.73%), Query Frame = 2
Query:  212 DRPLWFPGSTPPSWLDGSLPGDYGFDPLGLGSDPELL------KWFAQAELIHGRWAMLAVAGILIPEWLESIGLIEN---FSWYD------AGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYK--TKPKPDVGYPGGIWFDPMMWGKRSPXPVMVLRTKGX*DGRLAMLAFRGFCFQPFIRAGSP 763
            +R LWF      S+LDG LPGD+GFDPLGL SDPE        KW A  E+I+GR+AML  AG + PE L   GLI      +W+       AG+  Y+AD  TLFV+++ALMG+ E RR+ D   PG +  Q  L  +       D  YPGG  F+P+ +GK     +  L+ K   +GRLAMLA  G+  Q  +    P
Sbjct:   52 NRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGK-DEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGP 250          
BLAST of EY664891 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 75/182 (41.21%), Postives = 93/182 (51.10%), Query Frame = 2
Query:  245 PSWLDGSLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADP---TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPYKTKPK------PDVGYPGGIWFDPMMWGKRSPXPVMV--------LRTKGX*DGRLAMLAFRGFCFQ 739
            P WLDGSLPGD+GFDPLGLG DP  LKW+ +AELIHGRWAM AV GI + +    I       W++AG+      P    +L   QL LMGWVE +RW D  +     I    P+    +       + GYPGG +FDP+         V V        L+       RLAMLA   F F+
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFE 243          
The following BLAST results are available for this feature:
BLAST of EY664891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB12_PETHY1.860e-6964.52Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC1.574e-6860.41Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_ARATH5.449e-4551.10Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA7.117e-4551.67Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB120_HORVU8.162e-3343.72Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB23_PEA1.539e-3142.29Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4_SPIOL4.951e-3042.86Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC4.951e-3042.31Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB13_SOLLC4.192e-2941.79Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB4B_SOLLC7.905e-2841.21Chlorophyll a-b binding protein CP24 10B, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664891 ID=EY664891; Name=EY664891; organism=Citrus sinensis; type=EST; length=844bp
CTCCCGACTGAGCAAAGCTTTGTCATCTTCATTCTCATCCATGGCCCTAG
CCATTGCTTCTACAGCACTTTCGACCCTCCCATTCAGCAGGTGCAGGGAC
ATACCTCAGAAACGTTTTACAGAGAAGATTACAAAATGCCTAGTGGGAAG
AGGTGGTGTGATAGTGAATGCAACAAAAGGAGTGTCAAGTGTTTGTGAAC
CGCTCCCTCCGGACAGACCATTGTGGTTCCCTGGCAGCACACCGCCCTCT
TGGCTTGATGGCAGCCTTCCGGGAGATTATGGCTTCGATCCTCTTGGATT
AGGGTCTGATCCAGAGTTGCTTAAATGGTTTGCTCAAGCTGAGCTAATTC
ACGGCAGGTGGGCAATGCTGGCTGTGGCTGGAATCCTCATACCAGAATGG
CTTGAAAGCATTGGCCTCATTGAGAACTTCTCATGGTACGATGCTGGTTC
TCGTGAATACTTTGCAGACCCCACAACTTTATTTGTGGTTCAGTTGGCCC
TGATGGGATGGGTAGAAGGCAGAAGATGGGCTGATATAATTAATCCAGGA
TGTGTTGACATTCAACCAGATCTCCCATACAAGACAAAGCCGAAGCCAGA
TGTTGGCTACCCTGGTGGGATATGGTTTGATCCCATGATGTGGGGAAAGA
GGTCCCCANAGCCTGTGATGGTGTTGAGGACTAAGGGANNNTAAGATGGG
CGTCTTGCTATGCTAGCTTTTCGTGGCTTCTGCTTTCAGCCATTTATCAG
GGCAGGGTCCCCTTTGAAACTGGCTTTGCATGTGCAAATCCTGGTCATTG
CACGNATTCTGGCTTTACATNACATGATGCTTGGATTGGACTGA
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