EY664879

Overview
NameEY664879
Unique NameEY664879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664879_ssr248 microsatellite EY664879_ssr248:248..262. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9789 contig Csv1_Contig9789:13..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664879 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.144e-49
Identity = 108/173 (62.43%), Postives = 126/173 (72.83%), Query Frame = 1
Query:  157 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGMFAMLGLXALAFTEFGKG 651
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNG  AMLGL ALAFTEF KG
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKG 192          
BLAST of EY664879 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.282e-34
Identity = 87/195 (44.62%), Postives = 121/195 (62.05%), Query Frame = 1
Query:   88 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGMFAMLGLXALAFTEFGKGG 654
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNG FAM+GL ALAFTE+ KGG
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGG 194          
BLAST of EY664879 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.502e-30
Identity = 72/127 (56.69%), Postives = 89/127 (70.08%), Query Frame = 1
Query:  277 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGMFAMLGLXALAFTEFGKG 651
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNG FAMLGL ALA TEF  G
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITG 225          
BLAST of EY664879 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.573e-30
Identity = 84/185 (45.41%), Postives = 107/185 (57.84%), Query Frame = 1
Query:  100 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGMFAMLGLXALAFTEFGKG 651
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNG FAMLGL ALA TE   G
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITG 166          
BLAST of EY664879 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.279e-30
Identity = 66/117 (56.41%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  304 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGMFAMLGLXALAFTEFGKG 651
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNG FAM+GL ALA TE   G
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of EY664879 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.229e-17
Identity = 59/124 (47.58%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  280 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGMFAMLGLXALAFTE 639
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NG FAM+G  A+   E
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYE 164          
The following BLAST results are available for this feature:
BLAST of EY664879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA9.144e-4962.43Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.282e-3444.62Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU2.502e-3056.69High molecular mass early light-inducible protein ... [more]
ELI9_HORVU5.573e-3045.41Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU7.279e-3056.41Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA9.229e-1747.58Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664879 ID=EY664879; Name=EY664879; organism=Citrus sinensis; type=EST; length=765bp
CCCGACCCACGCGTCCGGAACCCGCCGACCTGAAGCACCCAATTCCCGAA
TTATACTTTGTTCTGTTTTCTACTTCATAAATTAAAAATGGCCGCATCAC
TTGCTACTCAATCTATGCTGGCAAGTCCTGTAGCAGCTCGTGTGACTGGT
ATCAGGAGATCCGGGGCAAACCAACTTTCCTCCGTCAAGTACTTGCCTAG
TCTGCGTAGAAATGTCAACTTATCCGTGCGCTGCACGGCAGAGGATGAGC
AGCAGCAGCAGCAGAAAGATGATCAACCAACCATACCGAAAGCTGAGCCT
CAGCCACCAAAGAAGCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTTGC
GTTCAGCGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTG
GGTTCGTGGCTGCATTGGGGGTGGAGATATCCAAGGGTCAGGATGTGTTT
GCCCAGTTATCAGACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTTTT
GCTCACGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGT
CTAAATCGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGAATGGGATG
TTTGCTATGCTGGGCCTTGNTGCTTTGGCTTTCACCGAGTTTGGTAAGGG
TGGCACCCCTTGTTAAAGCTAATTNNTGTTAGATCTGTAGATCTGTATTT
TTTTAACTAATAATGTATGAGATCCTACTNGTATTAAATCTCTATTTCTC
AAAAAAAAAAAAAAA
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