EY664869

Overview
NameEY664869
Unique NameEY664869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:282..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.183e-34
Identity = 65/78 (83.33%), Postives = 75/78 (96.15%), Query Frame = 2
Query:   20 CPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDD+Q+GEGFVLTCAAYPTSDVTIETHKEE++
Sbjct:   70 CDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.544e-34
Identity = 65/79 (82.28%), Postives = 75/79 (94.94%), Query Frame = 2
Query:   17 NCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            +CPDDT+ILDAAEEAGLDLPYSCRAGACS+C GK+V+GT+DQS+QSFLDDDQ+  G+VLTC AYPTSDVTIETHKEE+L
Sbjct:   19 DCPDDTYILDAAEEAGLDLPYSCRAGACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDL 97          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 2
Query:   20 CPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG VDQS++SFLDDDQ+ EGFVLTCAAYPTSDVTIETHKEEEL
Sbjct:   18 CDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.494e-34
Identity = 64/78 (82.05%), Postives = 74/78 (94.87%), Query Frame = 2
Query:   20 CPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDDDQ+ EGFVLTCAAYPTSDVTIETH+EE++
Sbjct:   18 CDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 2
Query:   20 CPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            CPDDT+ILDAAEEAGLDLPYSCRAGACSSC GKV +GTVDQS+QSFLDD QM  GFVLTC AYPTSD TI THKEE+L
Sbjct:   18 CPDDTYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDL 95          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 2
Query:   17 NCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 256
            +CPDDT++LDAAEEAGLDLPYSCRAG+CSSC GKV +GTVDQ +QSFLDDDQ+  GFVLTC AYP  DVTIETHKEE++A
Sbjct:   17 DCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDIA 96          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.804e-33
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 2
Query:   26 DDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            DDT+ILDAAEE G+DLPYSCRAGACS+C GKVVSGTVDQS+QSFLDDDQ+  GFVLTC AYPTSDVTIETHKEE+L
Sbjct:   23 DDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.804e-33
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 2
Query:   26 DDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            DDT+ILDAAEE G+DLPYSCRAGACS+C GKVVSGTVDQS+QSFLDDDQ+  GFVLTC AYPTSDVTIETHKEE+L
Sbjct:   23 DDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 4.968e-33
Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 2
Query:   20 CPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            CP DT+ILDAAEEAGLDLPYSCRAGACSSC GKV +GTVDQS+QSFLDD QMG GFVLTC AYPTSD TI+TH+EE L
Sbjct:   48 CPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125          
BLAST of EY664869 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.968e-33
Identity = 62/79 (78.48%), Postives = 72/79 (91.14%), Query Frame = 2
Query:   17 NCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 253
            +CPDDT++LDAAEEAGLDLPYSCRAG+CSSCTGKV +GTVDQ +QSFLDDDQ+  GFVLTC A+P  DVTIETHKEE++
Sbjct:   17 DCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95          
The following BLAST results are available for this feature:
BLAST of EY664869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER2_ARATH1.183e-3483.33Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER1_APHFL1.544e-3482.28Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]
FER_BRANA2.634e-3484.62Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER3_RAPSA4.494e-3482.05Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER_SCEQU2.230e-3384.62Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]
FER1_PHYES2.230e-3378.75Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]
FER1_SYNP63.804e-3385.53Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE73.804e-3385.53Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]
FER_CHLRE4.968e-3383.33Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER1_PHYAM4.968e-3378.48Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-D07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664869 ID=EY664869; Name=EY664869; organism=Citrus sinensis; type=EST; length=557bp
CCACGCGTCCGGAAATAACTGTCCTGATGACACGTTTATTCTTGATGCTG
CTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGC
TCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCA
AAGCTTTCTGGATGATGATCAAATGGGAGAAGGTTTTGTTCTCACTTGTG
CTGCTTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAG
CTCGCTGGTTAATAATGTGCTCTTGATATCTCATTATTATCTTCTCTTTT
ATGTGTTGTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAG
TAATTTGAGAATGATTCTTGTAATGTGTTTTTATTTCTTGTTGCAAAGAA
GTTGTAATTGCACCGGCCATGAATGCGCATCGTACCTAGAGGGTGAGGTT
TCTCATCCCATCCGAACATGGTACCGTTCTATAATTAAGAGTCAAGCAAG
AACAATGGATCTTTCGTTGTATTTCATCGGTAAAAAAAAAAAAAAAAAAA
AAAAAAA
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