EY664866

Overview
NameEY664866
Unique NameEY664866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664866_ssr666 microsatellite EY664866_ssr666:666..677. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1754 contig Csv1_Contig1754:149..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664866 vs. ExPASy Swiss-Prot
Match: S38A1_RAT (Sodium-coupled neutral amino acid transporter 1 OS=Rattus norvegicus GN=Slc38a1 PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 3.332e-11
Identity = 45/140 (32.14%), Postives = 72/140 (51.43%), Query Frame = 3
Query:  201 QQLSHVLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTK----RFLSITLVLLVFSYTAAITIPDIWYFFQLLRSTSAVCLAFIFPG--VIALTDVHGISTTRDRIIATVMIVLAVVTSTIAISTNIYE 602
            Q    +L   VRL+  + ++L  P+L F++R+++ EL        AK TK    R + +T++LLV      I IP +   F ++  TSA  L FI P    + +T+  G   T+ RI A + + L V+ S I+I   IY+
Sbjct:  344 QSTGDILILTVRLAVIVAVILTVPVLFFTVRSSLFEL--------AKKTKFHLCRHVLVTIILLVIINLLVIFIPSMKDIFGVVGVTSANMLIFILPSSLYLKITNQDGDKNTQ-RIWAALFLALGVLFSLISIPLVIYD 474          

HSP 2 Score: 36.965 bits (84), Expect = 3.332e-11
Identity = 26/72 (36.11%), Postives = 38/72 (52.78%), Query Frame = 2
Query:    8 AFTFHFNVHPIGFEL----DKPSDMITSVRISLTLCAAIYFSVSLFGYLLFGESIMSDILINFDHSSGSTII 211
            AF  H +V PI  EL     K   M+++  IS      +YF  ++FGYL F E + SD+L  +  S+G  +I
Sbjct:  283 AFVCHPSVLPIYSELKDRSQKKMQMVSN--ISFFAMFVMYFLTAIFGYLTFYEKVQSDLLHKY-QSTGDILI 351          
The following BLAST results are available for this feature:
BLAST of EY664866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
S38A1_RAT3.332e-1132.14Sodium-coupled neutral amino acid transporter 1 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-D04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664866 ID=EY664866; Name=EY664866; organism=Citrus sinensis; type=EST; length=694bp
TGTTACAGCTTTCACTTTTCATTTTAATGTTCATCCGATAGGTTTTGAGT
TAGACAAGCCTTCTGACATGATCACATCAGTAAGAATTTCATTAACACTA
TGTGCCGCCATCTACTTTTCCGTAAGCCTGTTTGGGTACCTTCTGTTTGG
GGAGTCAATCATGTCTGACATCCTCATAAATTTCGATCATAGTTCTGGTT
CAACAATTATCTCATGTACTCAATGACCTTGTTCGGTTAAGCTATGCACT
TCACCTCATGCTCGTGTTCCCTATGTTGAACTTTTCTCTGAGGGCTAACA
TCGATGAGCTGCTTTTCTCCCAGAAACCTCTTCTGGCAAAAGACACCAAA
AGATTTTTGTCCATCACCCTTGTGCTTCTAGTATTCTCTTATACAGCAGC
CATAACGATCCCGGACATATGGTACTTCTTTCAGTTACTACGATCGACTT
CTGCTGTCTGTCTCGCTTTCATTTTCCCAGGTGTCATTGCTCTCACGGAT
GTTCATGGCATATCAACAACAAGGGATAGGATCATCGCAACAGTGATGAT
AGTTCTAGCTGTAGTCACTAGCACAATAGCTATTTCCACAAATATATACG
AGTCGATTAGAAACACATCCTAGATTGCTTCCTGATTTTTACTCTATGCT
GTAGCAGAGGNGACCTATATATATATATCTTCTACCTCTTTCCG
back to top