EY664842

Overview
NameEY664842
Unique NameEY664842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664842 vs. ExPASy Swiss-Prot
Match: PPR1_ARATH (Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana GN=At1g01970 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.446e-23
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  392 EVIKAEDMGKTQVKDDTSRFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRFMKPXRADWL 643
            EV++ ED       + +  F W  +G N+TEEQ +AI++ P KM+KRC+A ++QIIC SPE G+  DLL AW+R M P RADWL
Sbjct:   57 EVVEKEDA------EQSRSFNWADVGLNLTEEQDEAITRIPIKMSKRCQALMRQIICFSPEKGSFCDLLGAWLRRMNPIRADWL 134          

HSP 2 Score: 35.8094 bits (81), Expect = 6.446e-23
Identity = 17/43 (39.53%), Postives = 24/43 (55.81%), Query Frame = 3
Query:  645 AVLKQLKLMEHPLYLQVXXXXXXXXXXXXNIRDYTKISMGYGK 773
            ++LK+LK ++ P Y++V            N RDYTKI   YGK
Sbjct:  135 SILKELKNLDSPFYIKVAEFSLLQDSFEANARDYTKIIHYYGK 177          
The following BLAST results are available for this feature:
BLAST of EY664842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PPR1_ARATH6.446e-2350.00Pentatricopeptide repeat-containing protein At1g01... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-071-A12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664842 ID=EY664842; Name=EY664842; organism=Citrus sinensis; type=EST; length=882bp
CCACGCGTCCGTATTGATATTGAGAGAGTAGATGAGAGCGGGAAAAGTAC
ACGTATTATCAATTATTTTTTAATCTCATAATGAGGCAAGTAAATGAATT
AACCGAAAATTAGGGTCCTGTGAGATAAATTGTCAAATACCGCTCTTTAG
GAAAGCAACTCTCTGTCAGTTACTGGATGGCGTGGACCGTGTGAGGGAAA
TTGGCATCTTCTTACTTCAGTCGAGCATGGCGCCCTGTGATTGCAACATG
TTGCCCCGTTCGTACTCAGCTTACCAAGTGTTCGACGAAATTACAGCTCC
AAAACCCGGACTCCGCCTGTCTTGGAGAAACTTATCATTACATCGAAAAC
CAGCGAAATGGTCTCGAAGCTTGCGTTCTGGGCCGGCGTTGGAAGTAATT
AAAGCAGAAGATATGGGAAAAACTCAAGTGAAAGACGATACATCAAGGTT
TACGTGGATTCAAATTGGTCCCAACATTACAGAGGAACAAAAGCAGGCAA
TATCTCAATTCCCACGAAAGATGACCAAGAGATGCAAGGCATTCGTCAAG
CAGATTATTTGCGTTTCTCCTGAAACGGGAAATTTATCTGATTTGTTGGC
TGCTTGGGTGAGGTTTATGAAGCCTANGAGAGCCGATTGGCTTTGCGGTT
CTTAAACAATTGAAATTAATGGAACATCCCCTGTATCTNCAGGTGGCAGA
ACTTGCTCTACTAGAAGAATCTTTCGAAGCTAATATCCGTGACTATACCA
AGATATCCATGGGTTATGGGAAAAAATGCAGATTCAAAATGCTGAAACAC
TCTCTTTACATGAANAGAAGAGCTTCATCTGTGACAGGTAACTTTACGTN
TATGTTGGTATGTACAGCAGGCANGCATCTGA
back to top