EY664827

Overview
NameEY664827
Unique NameEY664827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664827_ssr26 microsatellite EY664827_ssr26:26..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7969 contig Csv1_Contig7969:1..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCD31_ARATH (Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3)

HSP 1 Score: 295.049 bits (754), Expect = 3.546e-79
Identity = 147/254 (57.87%), Postives = 192/254 (75.59%), Query Frame = 3
Query:  114 DAETERCEEKES----PLPPVLQEHDLFWDDNELLSLICKEKKENFVPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIXEVEPCNPVEHQNLLMGVLNISQDKLKECYLLIL 863
            D E E  EE  S      P V+ + DLFW+D +L++L  KE+++     D   D  L   RKE V W+LRV AH+GF+ L A+LA+ Y D+FI S+S Q+DKPWM QLV+VACLSLAAKV+ETQVPLLLD QV++ KYVFEAKTIQRMELL+LSTL+W+M+ +TPISF DHI+RRLGLK + HW+FL +C  LLLSVI+DSRF+ YLPS +A ATM+  I +V+P +P+ +Q  L+GVLN++++K+K CY LIL
Sbjct:   30 DDEGEEVEENSSLSSSSSPFVVLQQDLFWEDEDLVTLFSKEEEQGLSCLD---DVYLSTDRKEAVGWILRVNAHYGFSTLAAVLAITYLDKFICSYSLQRDKPWMLQLVSVACLSLAAKVEETQVPLLLDFQVEETKYVFEAKTIQRMELLILSTLEWKMHLITPISFVDHIIRRLGLKNNAHWDFLNKCHRLLLSVISDSRFVGYLPSVVAAATMMRIIEQVDPFDPLSYQTNLLGVLNLTKEKVKTCYDLIL 280          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCD32_ARATH (Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 7.899e-79
Identity = 145/232 (62.50%), Postives = 183/232 (78.88%), Query Frame = 3
Query:  177 DLF-WDDNELLSLICKEKKENFVPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIXEVEPCNPVEHQNLLMGVLNISQDKLKECYLLILXY 869
            D+F WDD+E+LSLI KE + N    + I D  L+  RKE ++WVLRVK+H+GFT+LTAILAVNYFDRF+ S   Q DKPWM QLVAVA LSLAAKV+E QVPLLLDLQV++ +Y+FEAKTIQRMELL+LSTLQWRM+PVTPISFFDHI+RR G K H   +F  +CE LL+SVIAD+RFM Y PS LATA M+    E++PC+ VE+Q+ +  +L ++Q+K+ ECY L+L +
Sbjct:   60 DMFLWDDDEILSLISKENETNPCFGEQILDGFLVSCRKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTSIKLQTDKPWMSQLVAVASLSLAAKVEEIQVPLLLDLQVEEARYLFEAKTIQRMELLILSTLQWRMHPVTPISFFDHIIRRFGSKWHQQLDFCRKCERLLISVIADTRFMRYFPSVLATAIMILVFEELKPCDEVEYQSQITTLLKVNQEKVNECYELLLEH 291          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCD33_ARATH (Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 8.174e-76
Identity = 137/253 (54.15%), Postives = 186/253 (73.52%), Query Frame = 3
Query:  120 ETERCEEKESPLPPV---LQEHDLFWDDNELLSLICKEKKENFVPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIXEVEPCNPVEHQNLLMGVLNISQDKLKECYLLILXY 869
            + + C+E     P +   L +HD+ WDD+EL +LI K+  E  +  + + DE L+L R++ ++W+ +VK+H+GF +LTA+LAVNYFDRFI S  FQ DKPWM QL A+ACLSLAAKV+E +VP LLD QV++ +YVFEAKTIQRMELLVLSTL WRM+PVTPISFFDHI+RR   K+H   EFL RCE LLLS+I DSRF+ + PS LATA M+  I +++ C+   +Q+ LM +L +  +K+ +CY L+L +
Sbjct:   31 QVDLCDESVEKFPFLNLGLSDHDMLWDDDELSTLISKQ--EPCLYDEILDDEFLVLCREKALDWIFKVKSHYGFNSLTALLAVNYFDRFITSRKFQTDKPWMSQLTALACLSLAAKVEEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLSTLDWRMHPVTPISFFDHIIRRYSFKSHHQLEFLSRCESLLLSIIPDSRFLSFSPSVLATAIMVSVIRDLKMCDEAVYQSQLMTLLKVDSEKVNKCYELVLDH 281          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCD21_ARATH (Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 2.746e-39
Identity = 79/202 (39.11%), Postives = 128/202 (63.37%), Query Frame = 3
Query:  255 ISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIXEVEPCNPVEHQNLLMGVLNISQDKLKECYLLI 860
            +S ++ +  R + ++W+L+V AH+ F  L   L++NY DRF+ S+   KDK W  QL+AV+CLSLA+K++ET VP ++DLQV+DPK+VFEAKTI+RMELLV++TL WR+  +TP SF D+ V +  +  H+    +YR    +L+      F+ + PS +A A  +      E    ++ +  L  ++ + Q+++K C  L+
Sbjct:   88 LSGDLDLSVRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVDK--ISGHVSENLIYRSSRFILNTTKAIEFLDFRPSEIAAAAAVSVSISGE-TECIDEEKALSSLIYVKQERVKRCLNLM 286          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCD23_ORYSJ (Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica GN=CYCD2-3 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.842e-35
Identity = 74/169 (43.79%), Postives = 110/169 (65.09%), Query Frame = 3
Query:  267 ILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQ--KDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIXE 767
            I +  R   ++W+ +V+A++ F  L A LAVNY DRF+ S  F    D PWM QL+ VACLSLAAK++ET  P  LDLQV +P+YVF+A+TI RME++VL+TL+WRM  VTP ++  H + ++     +  E + RC  ++LS +  + F+ + PS +ATA  L  + +
Sbjct:   99 IELSCRIAAIDWICKVQAYYSFGPLCAYLAVNYLDRFLSSVEFSVTNDMPWMQQLLIVACLSLAAKMEETAAPGTLDLQVCNPEYVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKINEGNRITSELISRCTEIILSTMKATVFLRFRPSEIATAVALSVVAD 267          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 5.360e-35
Identity = 81/196 (41.33%), Postives = 117/196 (59.69%), Query Frame = 3
Query:  279 ARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIXEVEPCNPV--EHQNLLMGVLNISQDKLKECYLLI 860
            AR++ V W+L+V+A++ F  LTA LAVNY DRF+ +    +   W  QL+AVACLSLAAK++E  VP L D QV   KY+FEAKTI+RMELLVLS L WR+  VTP  F      ++         F+     ++LS I ++ F+ Y PS++A A +L    E+   + V   H++       +S++K+  CY L+
Sbjct:   81 AREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYKIDPSGTFLGFFISHATEIILSNIKEASFLEYWPSSIAAAAILCVANELPSLSSVVNPHESPETWCDGLSKEKIVRCYRLM 276          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCD42_ORYSJ (Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.194e-34
Identity = 78/236 (33.05%), Postives = 132/236 (55.93%), Query Frame = 3
Query:  162 VLQEHDLFWDDNELLSLICKEKKENFVPSDPISD-------EILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIXEVEPCNPVEHQNLLMGVLNISQDKLKEC 848
            V +E D+F   +E       E+++  +P     +       ++ +  R E + W+  V  ++ F+++TA LAVNY DRF+  +   + + WM QL++VACLS+AAK++ET VP  LDLQ+ +P+++FE +TI RMELLVL+ L WRM  VTP S+ D+ +R+L         +L R   L+L + A + F+ + PS +A A       E      V  +++     ++ + ++ +C
Sbjct:   63 VEEEEDMFPRQSEECVASLVEREQAHMPRADYGERLRGGGGDVDLRVRSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRSSELILRIAAGTGFLEFRPSEIAAAVAATVAGE---ATGVVEEDIAEAFTHVDKGRVLQC 295          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCD41_ORYSJ (Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.660e-34
Identity = 75/162 (46.30%), Postives = 101/162 (62.35%), Query Frame = 3
Query:  282 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIXE 767
            R + ++W+ +V +++ F  LTA LAVNY DRF+  +     K WM QL+AVACLSLAAK++ET VP  LDLQV + +YVFEAKTIQRMELLVLSTL+WRM  VTP S+ D+ +R L                L+L +   +  + + PS +A A     + E
Sbjct:  103 RMDAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLSSELILCIARGTECLGFRPSEIAAAVAAAVVGE 264          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCD22_ORYSJ (Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.660e-34
Identity = 74/194 (38.14%), Postives = 120/194 (61.86%), Query Frame = 3
Query:  282 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIXEVEPCNPVEHQNLLMGVLNISQDKLKECYLLIL 863
            RK+ ++W+ +V +++ F  L+  LAVNY DRF+ S +   D+ WM QL++V+CLSLA K++ET VPL +DLQV D +YVFEA+ I+RMEL+V+ TL+WR+  VTP SF  + + +        +     C  L +  + DSRF+ + PS +A A +L  + E +    V +  L    + ++++ +  CY L++
Sbjct:   95 RKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDKFNEGKPPSYTLASWCSDLTVGTLKDSRFLSFRPSEIAAAVVLAVLAENQFL--VFNSALGESEIPVNKEMVMRCYELMV 286          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCD32_ORYSJ (Cyclin-D3-2 OS=Oryza sativa subsp. japonica GN=CYCD3-2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.252e-33
Identity = 95/245 (38.78%), Postives = 138/245 (56.33%), Query Frame = 3
Query:  150 PLPPVLQEHDLFWDDNELLSLICKEKKENFVPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQK-DKPWMGQLVAVACLSLAAKVDETQVPLLLDLQV-----KDPK--YVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIXEVEPCNPVEHQNLLMGVLNISQDKLKECYLLI 860
            P PP+L       DD   L    + K++   P+        + AR+  V W LR  A  GF+ALTA LAV Y DR  L  + +  D+PWM +L AVAC++LAAKV+ET+VP+LLDLQ+      DP   YVFE KT++RMELLVLS L WRM+PVTP+S+   ++         H   L+ C+  LL+++ D R+  + PS  A A +L T          + +  L+ +++  +D++ EC  +I
Sbjct:   40 PPPPLLD------DDLPALFHALRGKEDPLRPAADDDGYGGVSAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMARLAAVACVALAAKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYLQPLLGT------AHAARLHHCDTALLALMPDWRWPRHRPSAWAAAALLATAGWCGGGGGDDAE--LLALIDAPKDEMAECAKII 270          
The following BLAST results are available for this feature:
BLAST of EY664827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CCD31_ARATH3.546e-7957.87Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=... [more]
CCD32_ARATH7.899e-7962.50Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=... [more]
CCD33_ARATH8.174e-7654.15Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=... [more]
CCD21_ARATH2.746e-3939.11Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=... [more]
CCD23_ORYSJ1.842e-3543.79Putative cyclin-D2-3 OS=Oryza sativa subsp. japoni... [more]
CCD11_ARATH5.360e-3541.33Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=... [more]
CCD42_ORYSJ1.194e-3433.05Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD41_ORYSJ2.660e-3446.30Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD22_ORYSJ2.660e-3438.14Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD32_ORYSJ2.252e-3338.78Cyclin-D3-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-070-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664827 ID=EY664827; Name=EY664827; organism=Citrus sinensis; type=EST; length=870bp
CTTTGCCTCATNATAATACTGATGCCCACCACCACCAGCTTGAAACCACT
CCACTGGCTCTTGACGGCCTTTTTTGCGATGAAGAAAGTTTCGAGTTTGA
GGAGTGTTGTATTGATGCTGAGACTGAGAGATGTGAGGAAAAGGAGTCGC
CTTTACCACCTGTTTTGCAAGAACATGACTTGTTTTGGGATGATAACGAG
TTGTTGTCTTTGATCTGTAAAGAAAAAAAAGAAAACTTTGTGCCTAGTGA
TCCAATCTCAGATGAGATTTTAATTCTGGCTCGTAAAGAGGTTGTTGAGT
GGGTGCTTAGGGTTAAGGCTCATTTTGGTTTCACTGCTTTGACCGCTATT
CTTGCTGTTAACTACTTTGATAGGTTCATTTTAAGCCATTCGTTTCAAAA
AGACAAGCCCTGGATGGGTCAGCTTGTTGCTGTAGCTTGCTTGTCTCTGG
CTGCTAAAGTGGATGAGACCCAAGTGCCCCTTCTTTTGGACTTGCAAGTG
AAGGACCCGAAATATGTTTTTGAGGCAAAGACTATTCAGAGAATGGAGCT
TCTGGTGCTCTCTACACTTCAATGGAGGATGAATCCTGTGACTCCTATTT
CATTCTTTGATCACATTGTGAGAAGGCTTGGGTTGAAGACCCACTTGCAC
TGGGAATTTCTCTATAGGTGTGAGCATTTGCTTCTCTCTGTCATTGCTGA
TTCACGGTTTATGTGCTATCTTCCTTCTACATTGGCTACTGCAACAATGC
TTCATACAATTCANGAGGTTGAGCCATGCAATCCTGTGGAACACCAAAAT
CTGCTTATGGGTGTGCTTAACATCAGTCAGGATAAGCTTAAGGAGTGCTA
CTTGCTCATCCTANAGTATC
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